Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11147g00003 ATGAACGAGTACAGGATTGATTGTGTTGGACGGATTCAACAAAGCTATGGTCTAAATGGGGATTTGAGTTCAGAGTTTGGCAATTGTTCTAGTCAATGTTTTGATATGGCCAGTGGTGGATTTGAAGAGGAACCACACATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAATCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGATTCCCACAATATGATAGACTAGTTGGTAACCCCTCTTTGATATCTCAATTCTCTAAGATCAGTGATGCGGAATTCCCTTTGTATCAATCTCCAAGGCAAAACCATTTCTTGGCTTCATTGGCAAACCAACCTGCCCCTAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCCCATGTGAATAGCGATCAATGTGTTAGATCTCCTGAAAAGTCTAATAAAATCTCATCTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAATTGAACAACCCAAGTTGTTCATTGATGATGCTTCAAGCCCTTCGGTTCCTTGTATAGGAAATCAGGATCAAAGAGATTGTTGTGGCTCATACAATTTACCTGCTGCACAGATTAGCTTCTCTTCTCAGCAAGAGATGCTGTCACCAACACTCTCAGCAGGTAGTTTGCTAACTTCTTCTGGAAACTCTTCTTCAAATGGACCAGTAGTCTCAAGTAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAAGCAACGCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAAAGAACCAATGTAGAGAATGTGCATCTTGATGCCAAAACTGGCCTGCAAATTAGAGAGGCTCTTCAGTTGCAGCTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAACTACAGTTAAGGATTGAGGAACAAGGTAAGCAGCTGAAAATGATGTTTGACCAACAGCAGAAGACAAGTGACAGCAACTTGAGTACTCTGAATTTGGGCAATACAACTAATAATGATAGACCTATTAGTTCTAAAGATGTTCAGGTTTCAGTTTCCGAAGGGTCTAAAAGATTACTTATTCCTTCCAACATAACTTAG 1233 0.4047 MNEYRIDCVGRIQQSYGLNGDLSSEFGNCSSQCFDMASGGFEEEPHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLVGNPSLISQFSKISDAEFPLYQSPRQNHFLASLANQPAPNFELSNPLQAMLLSHVNSDQCVRSPEKSNKISSGNFPGSSFLPIEQPKLFIDDASSPSVPCIGNQDQRDCCGSYNLPAAQISFSSQQEMLSPTLSAGSLLTSSGNSSSNGPVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRTNVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSNLSTLNLGNTTNNDRPISSKDVQVSVSEGSKRLLIPSNIT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11147g00003 410 MobiDBLite consensus disorder prediction 364 393 - -
Vium11147g00003 410 Gene3D - 236 295 - -
Vium11147g00003 410 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 217 384 IPR044848 GO:0003700
Vium11147g00003 410 NCBIfam myb-like DNA-binding domain, SHAQKYF class 237 292 IPR006447 GO:0003677
Vium11147g00003 410 SUPERFAMILY Homeodomain-like 235 291 IPR009057 -
Vium11147g00003 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 294 IPR017930 -
Vium11147g00003 410 FunFam Myb family transcription factor 236 294 - -
Vium11147g00003 410 Coils Coil 323 343 - -
Vium11147g00003 410 Pfam MYB-CC type transfactor, LHEQLE motif 320 367 IPR025756 -
Vium11147g00003 410 Pfam Myb-like DNA-binding domain 241 290 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11147g00003 Vium-Chr11147 10951 14227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11147g00003 221 364 G2-like Transcription Factor Family AT4G28610 57.143 2.45e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium11147g00003 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11147g00003 - - gmx:102668541 584.334