Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11147g00002 ATGAACGAGTACAGGATTGATTGTGTTGGACGGATTCAACAAAGCTATGGTCTAAATGGGGATTTGAGTTCAGAGTTTGGCAATTGTTCTAGTCAATGTTTTGATATGGCCAGTGGTGGATTTGAAGAGGAACCACACATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAATCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGATTCCCACAATATGATAGACTAGTTGGTAACCCCTCTTTGATATCTCAATTCTCTAAGATCAGTGATGCGGAATTCCCTTTGTATCAATCTCCAAGGCAAAACCATTTCTTGGCTTCATTGGCAAACCAACCTGCCCCTAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCCCATGTGAATAGCGATCAATGTGTTAGATCTCCTGAAAAGTCTAATAAAATCTCATCTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAATTGAACAACCCAAGTTGTTCATTGATGATGCTTCAAGCCCTTCGGTTCCTTGTATAGGAAATCAGGATCAAAGAGATTGTTGTGGCTCATACAATTTACCTGCTGCACAGATTAGCTTCTCTTCTCAGCAAGAGATGCTGTCACCAACACTCTCAGCAGAAGCAACGCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAAAGAACCAATGTAGAGAATGTGCATCTTGATGCCAAAACTGGCCTGCAAATTAGAGAGGCTCTTCAGTTGCAGCTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAACTACAGTTAAGGATTGAGGAACAAGGTAAGCAGCTGAAAATGATGTTTGACCAACAGCAGAAGACAAGTGACAGCAACTTGAGTACTCTGAATTTGGGCAATACAACTAATAATGATAGACCTATTAGTTCTAAAGATGTTCAGGTTTCAGTTTCCGAAGGGTCTAAAAGATTACTTATTCCTTCCAACATAACTTAG 1101 0.4042 MNEYRIDCVGRIQQSYGLNGDLSSEFGNCSSQCFDMASGGFEEEPHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLVGNPSLISQFSKISDAEFPLYQSPRQNHFLASLANQPAPNFELSNPLQAMLLSHVNSDQCVRSPEKSNKISSGNFPGSSFLPIEQPKLFIDDASSPSVPCIGNQDQRDCCGSYNLPAAQISFSSQQEMLSPTLSAEATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRTNVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSNLSTLNLGNTTNNDRPISSKDVQVSVSEGSKRLLIPSNIT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11147g00002 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 218 340 IPR044848 GO:0003700
Vium11147g00002 366 Gene3D - 180 251 - -
Vium11147g00002 366 MobiDBLite consensus disorder prediction 320 349 - -
Vium11147g00002 366 Coils Coil 279 299 - -
Vium11147g00002 366 SUPERFAMILY Homeodomain-like 218 247 IPR009057 -
Vium11147g00002 366 Pfam MYB-CC type transfactor, LHEQLE motif 276 323 IPR025756 -
Vium11147g00002 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 248 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11147g00002 Vium-Chr11147 10951 14227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11147g00002 216 320 G2-like Transcription Factor Family AT4G28610 59.259 6.74e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium11147g00002 Myb_CC_LHEQLE 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11147g00002 - - gmx:102668541 510.375