Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11147g00001 ATGAACGAGTACAGGATTGATTGTGTTGGACGGATTCAACAAAGCTATGGTCTAAATGGGGATTTGAGTTCAGAGTTTGGCAATTGTTCTAGTCAATGTTTTGATATGGCCAGTGGTGGATTTGAAGAGGAACCACACATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAATCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGATTCCCACAATATGATAGACTAGTTGGTAACCCCTCTTTGATATCTCAATTCTCTAAGATCAGTGATGCGGAATTCCCTTTGTATCAATCTCCAAGGCAAAACCATTTCTTGGCTTCATTGGCAAACCAACCTGCCCCTAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCCCATGTGAATAGCGATCAATGTGTTAGATCTCCTGAAAAGTCTAATAAAATCTCATCTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAATTGAACAACCCAAGTTGTTCATTGATGATGCTTCAAGCCCTTCGGTTCCTTGTATAGGAAATCAGGATCAAAGAATTAGCTTCTCTTCTCAGCAAGAGATGCTGTCACCAACACTCTCAGCAGAAGCAACGCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAAAGAACCAATGTAGAGAATGTGCATCTTGATGCCAAAACTGGCCTGCAAATTAGAGAGGCTCTTCAGTTGCAGCTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAACTACAGTTAAGGATTGAGGAACAAGGTAAGCAGCTGAAAATGATGTTTGACCAACAGCAGAAGACAAGTGACAGCAACTTGAGTACTCTGAATTTGGGCAATACAACTAATAATGATAGACCTATTAGTTCTAAAGATGTTCAGGTTTCAGTTTCCGAAGGGTCTAAAAGATTACTTATTCCTTCCAACATAACTTAG 1065 0.4028 MNEYRIDCVGRIQQSYGLNGDLSSEFGNCSSQCFDMASGGFEEEPHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLVGNPSLISQFSKISDAEFPLYQSPRQNHFLASLANQPAPNFELSNPLQAMLLSHVNSDQCVRSPEKSNKISSGNFPGSSFLPIEQPKLFIDDASSPSVPCIGNQDQRISFSSQQEMLSPTLSAEATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRTNVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSNLSTLNLGNTTNNDRPISSKDVQVSVSEGSKRLLIPSNIT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11147g00001 354 SUPERFAMILY Homeodomain-like 205 235 IPR009057 -
Vium11147g00001 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 206 328 IPR044848 GO:0003700
Vium11147g00001 354 Pfam MYB-CC type transfactor, LHEQLE motif 264 311 IPR025756 -
Vium11147g00001 354 MobiDBLite consensus disorder prediction 308 337 - -
Vium11147g00001 354 Coils Coil 267 287 - -
Vium11147g00001 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 236 IPR006447 GO:0003677
Vium11147g00001 354 Gene3D - 172 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11147g00001 Vium-Chr11147 10951 14227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11147g00001 204 308 G2-like Transcription Factor Family AT4G28610 59.259 5.70e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium11147g00001 Myb_CC_LHEQLE 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11147g00001 - - gmx:102668541 486.878