Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11143g00001 ATGGCTCCCAGTGACAACAGATCCAACGATGTATGCGGGTCCAATTCGACCCGTTTGGACAAAGAGATCCGATACCGCGGGGTCAGGAAGAGACCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGGAAGAAAACACGCGTCTGGCTCGGAACCTTCGACACCGCCGAGGAGGCCGCGCGCGCTTATGATGCGGCGGCGCGTGATTTCCGCGGAGCGAAGGCGAAGACAAATTTTCCCACACACGCGGAACTTACCCACGTGGCGCGTAGCCCCAGCCAGAGCAGCACCCTCGAGTCCCCCTCTCCGCCGCCGCCGCTTGACCTCACTCTCACCCCACTCGCCGCCACCGGGGCGTTCGTCTTCCCTGTTGCCCGCCCCGTGGTTTTCTTTGACGCGTTCGCCCGTGCGGAGGTGCGGGCTTTCGATCTTCCCGTTACCGCCTTCCGCCGCACCGCCGTCGCCGCCACCACCCAGAGTGATTCCGACTCGTCCTCCGTCGTGGACTACGAGCGGGTCCCACATCGGAGAGTGTTGGATCTCGACCTTAATGTTCCTCCTCCACCGGAGGTTGCATGA 582 0.6426 MAPSDNRSNDVCGSNSTRLDKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTHAELTHVARSPSQSSTLESPSPPPPLDLTLTPLAATGAFVFPVARPVVFFDAFARAEVRAFDLPVTAFRRTAVAATTQSDSDSSSVVDYERVPHRRVLDLDLNVPPPPEVA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11143g00001 193 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vium11143g00001 193 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Vium11143g00001 193 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vium11143g00001 193 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vium11143g00001 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 171 - -
Vium11143g00001 193 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Vium11143g00001 193 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Vium11143g00001 193 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Vium11143g00001 193 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vium11143g00001 193 MobiDBLite consensus disorder prediction 82 107 - -
Vium11143g00001 193 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11143g00001 Vium-Chr11143 17995 18889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11143g00001 21 160 AP2-EREBP Transcription Factor Family AT3G15210 60.248 2.30e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium11143g00001 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11143g00001 K09286 - gmx:100785455 207.994