Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11136g00002 ATGGGTGGTGGCAGTGGTGATAGTGGTGATGGTGATCATAACAATTCTATTTCCATGGTTGTTAAGAACAAGAAGAGTGGCTCTATTCGGTCCATTTTTATGCATGCTGATGGCCTCGACATGTTTCTCATGATTTTCGGATTGATTGGAGCCATTGGTGATGGCTTAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATCATGAATAATATTGGAAATTTTTCTGGTGGAATAGATAGCACTTTCCTCGACAGCATCAATAAGAATTCTCTGGTTTTGTTATACTTGGCTTGTGGGTCTTTTGTTGCTTGTTTTCTAGAGGGTTATTGTTGGACAAGAACTGGCGAAAGACAAGCTGCTAGAATGAGAGTGAGGTACCTCAAGGCAGTGTTGAGGCAAGAAGTCGCATACTTTGATTTGCATGTCAGTAGCACATCCGAGGTCATCACCAGTGTCTCTAATGACAGCCTCGTAATTCAGGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTGGCGAGCTACATAGTGGGTTTTGCATTATTATGGAGATTGACCCTTGTGGGGTTCCCTTTCGTGGTTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACACTAATGGGGTTGGCCAGCAAGATGAGAGAAGAATACGACAAGGCTGGTACAGTGGCAGAACAAGCAATATCTTCCATCAGAACAGTTTACTCCTTTGTGGGTGAAAGCAAAACCATAGATGCTTTCTTTGATGCTCTACAAGGTTCAGTAAAGTTAGGACTCAGACAAGGCTTGGCAAAAGGCATAGCTATCGGAAGCAATGGTGTTGTGTTTGCTATATGGGCTTTCATATCCTATTATGGTAGCAGATTGGTCATGTACCACGGTGCCAAAGGAGGAACTGTGTTTGCGGTTGGAGCAGCCATAGCACTTGGAGGATTGGCCTTAGGTGCTGGTTTGTCGAACGTGAAGTACTTGTCGGAGGCAAGCACGGCAGGAGAACGAATAATGGAAGTGATAAAAAGGGTTCCGAAGATCGATTCAGACAACATGGGAGGGGAGATTCTGGAGGAGGTTTGTGGGGAAGTTGAGTTTGAGGATGTGAAGTTTGTGTACCCTTCGAGGCCTGACAGTGTGATTCTGAAGGAGTTCAGCCTGAGGGTTCCTGCTGGGAAAACAGTGGCACTGGTTGGAGGAAGTGGGTCAGGAAAATCCACAGTGATATCTCTTCTGCAGAGATTCTATGACCCAGTTGAGGGAGAGATACGTGTTGATGGTGTGGCCATTCACAGGTTGCAACTCAAGTGGTTGAGGTCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCACTCTTTGCAACCACCATTAAAGAGAATATACTGTTTGGAAGAGAAGATGCAACTGAGGAAGAGGTTCTCCAAGCTGCAAAAGCTTCCAATGCTCATAATTTCATCTCACAGTTGCCTCAAGGATATCATACTCAGGTGGGGGAGAGAGGAATTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCACGAGCAATAATAAAGAAGCCACGAATTCTTTTGTTAGATGAAGCAACGAGTGCCCTAGATTCTGAGTCCGAACGAGTTGTGCAAGAAGCATTGGACAAAGCAGCAGTGGGGCGCACCACGATCATCATTGCTCATCGATTATCCACCATAAGAAACGCAGATGTGATTGCTGTGGTGCAAAGTGGGAAGATCATGGAAATGGGGTCACACCATGAACTCATCCAAAACGACAATGGCCTCTACACCTCTCTAGTTCGTCTGCAACAAGCAAAAGACGAAAGAGAAGACACCCCTTTTCACCCTCTTCCTCCTCCTTCGTCATTATCATCATCATCCATATCAAACAAGGACAATCACAACACAAGCAGTCGTAGGTTGTCTCTTGTGAGTCGATCCAGTTCTGCCAACTCAATCCCTCGTGGTGATGATGTTGTTGAAGATGTTGTGGAAGAAGACATGAAGCTGCCACTTCCCTCCTTTCGAAGATTGCTGGCATTGAATATTCCTGAGTGGAAGCAAGCATGTATGGGGTGTTTGAATGCAGTGTTGTTTGGTGCAATACAACCTGTGTACGCATTTTCAATGGGGTCGGTGATATCTGTTTACTTTCTCCCAGACCATGATGAGATTAAAGAGAAAACCAGGATCTACTCCCTTTGTTTTCTAGGGTTGGCTGTGTTCTCCTTGGTGGTTAACATCCTCCAACACTATAACTTTGCTTACATGGGAGAGTACTTAACCAAAAGGATCAGAGAACGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACCGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGACAGAATGGCTCTAGTGGTGCAAACCATTTCTGCAGTGGTGATAGCTTTCACTATGGGCCTAGTCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCGATTATCATAGCCTGCTTCTACACAAGGCGTGTCCTTCTCAAGAGCATGTCTAGCAAGGCCATCAAGGCGCAAGATGAAAGTAGCAAGATAGCTGCAGAAGCTGTTTCCAACCTCAGAACCATCACAGCATTTTCTTCCCAAGAGAGGATCCTGAAGATGCTTGAAAAGGCACAAGAGGGACCAAGTCATGAAAGCATTCGGCAATCATGGTTTGCAGGTGTTGGTCTTGCCTGTTCCCAGAGCCTTACGTTTTGCACTTGGGCCTTGGACTTCTGGTATGGGGGAAAGCTTGTGTTCAAAGGGATCATCAGTGCCAAAGCATTGTTTGAGACCTTCATGATCTTAGTGAGCACAGGTAGGGTCATTGCAGATGCTGGCAGCATGACCAATGACCTTGCCAAAGGTTCTGATGCTGTGGGTTCAGTTTTTGCAATCCTAGACAGGTACACAAAAATTGAGCCTGATGATGAGACAGATGGACACAAGCCTGAAAAATTAACTGGGAAAATAGAGCTTCATGATGTCCATTTTGCATACCCAGCCAGGCCTAATGTGATGATCTTTCAAGGCTTCTCAATCAGAATAGATGCAGGCAAATCAACAGCATTGGTAGGGCAAAGTGGTTCTGGAAAATCAACAATAATAGGACTAATAGAGAGATTCTATGACCCACTAAAAGGGATAGTGGCCATAGATGGTAGAGACATAAAACAATATCACCTTAGGTCACTGAGGAAGCACATTGGTCTGGTGAGCCAAGAGCCAACATTGTTTGGTGGGAGCATAAGGGAAAACATTGCATATGGAGCATGTAACAAGGTTGATGAAAGTGAGATCATAGAAGCAGCAAGGGCTGCAAATGCTCATGACTTCATTGCAAGTCTGAAGGATGGATATGAAACATGGTGTGGAGATAGAGGAGTGCAACTCTCAGGGGGTCAGAAGCAAAGAATTGCAATAGCAAGAGCCATACTGAAGAACCCTGAAGTGCTGTTGCTGGATGAAGCCACCAGTGCTCTTGATAGCCAGTCAGAGAAATTGGTGCAAGATGCTCTAGACAGGGTGATGGTGGGAAGAACTAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAGAACTGTGATCAAATTGCTGTGCTAGACAAGGGAAAAGTGGTGGAGAAAGGGACTCATTCATCTTTGTTGGCTCAAGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTGCAAAGAAGACCAACAAAACATGAAGGTTAA 3798 0.4487 MGGGSGDSGDGDHNNSISMVVKNKKSGSIRSIFMHADGLDMFLMIFGLIGAIGDGLGTPLVLFITSKIMNNIGNFSGGIDSTFLDSINKNSLVLLYLACGSFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVSSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVASYIVGFALLWRLTLVGFPFVVLLVIPGFMYGRTLMGLASKMREEYDKAGTVAEQAISSIRTVYSFVGESKTIDAFFDALQGSVKLGLRQGLAKGIAIGSNGVVFAIWAFISYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYLSEASTAGERIMEVIKRVPKIDSDNMGGEILEEVCGEVEFEDVKFVYPSRPDSVILKEFSLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIHRLQLKWLRSQMGLVSQEPALFATTIKENILFGREDATEEEVLQAAKASNAHNFISQLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHHELIQNDNGLYTSLVRLQQAKDEREDTPFHPLPPPSSLSSSSISNKDNHNTSSRRLSLVSRSSSANSIPRGDDVVEDVVEEDMKLPLPSFRRLLALNIPEWKQACMGCLNAVLFGAIQPVYAFSMGSVISVYFLPDHDEIKEKTRIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQERILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFKGIISAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDETDGHKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIRIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVAIDGRDIKQYHLRSLRKHIGLVSQEPTLFGGSIRENIAYGACNKVDESEIIEAARAANAHDFIASLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALDRVMVGRTSVVVAHRLSTIQNCDQIAVLDKGKVVEKGTHSSLLAQGPSGAYYSLVSLQRRPTKHEG 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11136g00002 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 700 981 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium11136g00002 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 607 IPR027417 -
Vium11136g00002 1265 FunFam Putative ABC transporter B family member 8 659 1004 - -
Vium11136g00002 1265 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Vium11136g00002 1265 CDD ABC_MTABC3_MDL1_MDL2 1017 1257 - -
Vium11136g00002 1265 Gene3D - 367 639 IPR027417 -
Vium11136g00002 1265 SMART AAA_5 1044 1237 IPR003593 GO:0016887
Vium11136g00002 1265 SMART AAA_5 396 670 IPR003593 GO:0016887
Vium11136g00002 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 683 999 - -
Vium11136g00002 1265 SUPERFAMILY ABC transporter transmembrane region 675 1000 IPR036640 GO:0005524|GO:0016020
Vium11136g00002 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1008 1257 IPR027417 -
Vium11136g00002 1265 Pfam ABC transporter 387 536 IPR003439 GO:0005524
Vium11136g00002 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Vium11136g00002 1265 MobiDBLite consensus disorder prediction 625 658 - -
Vium11136g00002 1265 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Vium11136g00002 1265 MobiDBLite consensus disorder prediction 611 660 - -
Vium11136g00002 1265 Pfam ABC transporter transmembrane region 44 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium11136g00002 1265 Pfam ABC transporter transmembrane region 695 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium11136g00002 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 44 342 - -
Vium11136g00002 1265 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524|GO:0016887
Vium11136g00002 1265 SUPERFAMILY ABC transporter transmembrane region 40 353 IPR036640 GO:0005524|GO:0016020
Vium11136g00002 1265 Gene3D ABC transporter type 1, transmembrane domain 93 990 IPR036640 GO:0005524|GO:0016020
Vium11136g00002 1265 PANTHER ABC TRANSPORTER B FAMILY 22 745 IPR039421 -
Vium11136g00002 1265 FunFam ABC transporter B family member 4 359 614 - -
Vium11136g00002 1265 FunFam ABC transporter B family member 4 1007 1263 - -
Vium11136g00002 1265 Pfam ABC transporter 1037 1185 IPR003439 GO:0005524
Vium11136g00002 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1254 IPR003439 GO:0005524
Vium11136g00002 1265 FunFam ABC transporter B family member 1 31 365 - -
Vium11136g00002 1265 Gene3D - 1007 1264 IPR027417 -
Vium11136g00002 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 45 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11136g00002 Vium-Chr11136 44112 51294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11136g00002 7 1258 Calmodulin-binding Proteins AT2G36910 44.733 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11136g00002 K05658 - gmx:100807709 2132.45