Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium11136g00002 | ATGGGTGGTGGCAGTGGTGATAGTGGTGATGGTGATCATAACAATTCTATTTCCATGGTTGTTAAGAACAAGAAGAGTGGCTCTATTCGGTCCATTTTTATGCATGCTGATGGCCTCGACATGTTTCTCATGATTTTCGGATTGATTGGAGCCATTGGTGATGGCTTAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATCATGAATAATATTGGAAATTTTTCTGGTGGAATAGATAGCACTTTCCTCGACAGCATCAATAAGAATTCTCTGGTTTTGTTATACTTGGCTTGTGGGTCTTTTGTTGCTTGTTTTCTAGAGGGTTATTGTTGGACAAGAACTGGCGAAAGACAAGCTGCTAGAATGAGAGTGAGGTACCTCAAGGCAGTGTTGAGGCAAGAAGTCGCATACTTTGATTTGCATGTCAGTAGCACATCCGAGGTCATCACCAGTGTCTCTAATGACAGCCTCGTAATTCAGGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTGGCGAGCTACATAGTGGGTTTTGCATTATTATGGAGATTGACCCTTGTGGGGTTCCCTTTCGTGGTTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACACTAATGGGGTTGGCCAGCAAGATGAGAGAAGAATACGACAAGGCTGGTACAGTGGCAGAACAAGCAATATCTTCCATCAGAACAGTTTACTCCTTTGTGGGTGAAAGCAAAACCATAGATGCTTTCTTTGATGCTCTACAAGGTTCAGTAAAGTTAGGACTCAGACAAGGCTTGGCAAAAGGCATAGCTATCGGAAGCAATGGTGTTGTGTTTGCTATATGGGCTTTCATATCCTATTATGGTAGCAGATTGGTCATGTACCACGGTGCCAAAGGAGGAACTGTGTTTGCGGTTGGAGCAGCCATAGCACTTGGAGGATTGGCCTTAGGTGCTGGTTTGTCGAACGTGAAGTACTTGTCGGAGGCAAGCACGGCAGGAGAACGAATAATGGAAGTGATAAAAAGGGTTCCGAAGATCGATTCAGACAACATGGGAGGGGAGATTCTGGAGGAGGTTTGTGGGGAAGTTGAGTTTGAGGATGTGAAGTTTGTGTACCCTTCGAGGCCTGACAGTGTGATTCTGAAGGAGTTCAGCCTGAGGGTTCCTGCTGGGAAAACAGTGGCACTGGTTGGAGGAAGTGGGTCAGGAAAATCCACAGTGATATCTCTTCTGCAGAGATTCTATGACCCAGTTGAGGGAGAGATACGTGTTGATGGTGTGGCCATTCACAGGTTGCAACTCAAGTGGTTGAGGTCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCACTCTTTGCAACCACCATTAAAGAGAATATACTGTTTGGAAGAGAAGATGCAACTGAGGAAGAGGTTCTCCAAGCTGCAAAAGCTTCCAATGCTCATAATTTCATCTCACAGTTGCCTCAAGGATATCATACTCAGGTGGGGGAGAGAGGAATTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCACGAGCAATAATAAAGAAGCCACGAATTCTTTTGTTAGATGAAGCAACGAGTGCCCTAGATTCTGAGTCCGAACGAGTTGTGCAAGAAGCATTGGACAAAGCAGCAGTGGGGCGCACCACGATCATCATTGCTCATCGATTATCCACCATAAGAAACGCAGATGTGATTGCTGTGGTGCAAAGTGGGAAGATCATGGAAATGGGGTCACACCATGAACTCATCCAAAACGACAATGGCCTCTACACCTCTCTAGTTCGTCTGCAACAAGCAAAAGACGAAAGAGAAGACACCCCTTTTCACCCTCTTCCTCCTCCTTCGTCATTATCATCATCATCCATATCAAACAAGGACAATCACAACACAAGCAGTCGTAGGTTGTCTCTTGTGAGTCGATCCAGTTCTGCCAACTCAATCCCTCGTGGTGATGATGTTGTTGAAGATGTTGTGGAAGAAGACATGAAGCTGCCACTTCCCTCCTTTCGAAGATTGCTGGCATTGAATATTCCTGAGTGGAAGCAAGCATGTATGGGGTGTTTGAATGCAGTGTTGTTTGGTGCAATACAACCTGTGTACGCATTTTCAATGGGGTCGGTGATATCTGTTTACTTTCTCCCAGACCATGATGAGATTAAAGAGAAAACCAGGATCTACTCCCTTTGTTTTCTAGGGTTGGCTGTGTTCTCCTTGGTGGTTAACATCCTCCAACACTATAACTTTGCTTACATGGGAGAGTACTTAACCAAAAGGATCAGAGAACGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACCGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGACAGAATGGCTCTAGTGGTGCAAACCATTTCTGCAGTGGTGATAGCTTTCACTATGGGCCTAGTCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCGATTATCATAGCCTGCTTCTACACAAGGCGTGTCCTTCTCAAGAGCATGTCTAGCAAGGCCATCAAGGCGCAAGATGAAAGTAGCAAGATAGCTGCAGAAGCTGTTTCCAACCTCAGAACCATCACAGCATTTTCTTCCCAAGAGAGGATCCTGAAGATGCTTGAAAAGGCACAAGAGGGACCAAGTCATGAAAGCATTCGGCAATCATGGTTTGCAGGTGTTGGTCTTGCCTGTTCCCAGAGCCTTACGTTTTGCACTTGGGCCTTGGACTTCTGGTATGGGGGAAAGCTTGTGTTCAAAGGGATCATCAGTGCCAAAGCATTGTTTGAGACCTTCATGATCTTAGTGAGCACAGGTAGGGTCATTGCAGATGCTGGCAGCATGACCAATGACCTTGCCAAAGGTTCTGATGCTGTGGGTTCAGTTTTTGCAATCCTAGACAGGTACACAAAAATTGAGCCTGATGATGAGACAGATGGACACAAGCCTGAAAAATTAACTGGGAAAATAGAGCTTCATGATGTCCATTTTGCATACCCAGCCAGGCCTAATGTGATGATCTTTCAAGGCTTCTCAATCAGAATAGATGCAGGCAAATCAACAGCATTGGTAGGGCAAAGTGGTTCTGGAAAATCAACAATAATAGGACTAATAGAGAGATTCTATGACCCACTAAAAGGGATAGTGGCCATAGATGGTAGAGACATAAAACAATATCACCTTAGGTCACTGAGGAAGCACATTGGTCTGGTGAGCCAAGAGCCAACATTGTTTGGTGGGAGCATAAGGGAAAACATTGCATATGGAGCATGTAACAAGGTTGATGAAAGTGAGATCATAGAAGCAGCAAGGGCTGCAAATGCTCATGACTTCATTGCAAGTCTGAAGGATGGATATGAAACATGGTGTGGAGATAGAGGAGTGCAACTCTCAGGGGGTCAGAAGCAAAGAATTGCAATAGCAAGAGCCATACTGAAGAACCCTGAAGTGCTGTTGCTGGATGAAGCCACCAGTGCTCTTGATAGCCAGTCAGAGAAATTGGTGCAAGATGCTCTAGACAGGGTGATGGTGGGAAGAACTAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAGAACTGTGATCAAATTGCTGTGCTAGACAAGGGAAAAGTGGTGGAGAAAGGGACTCATTCATCTTTGTTGGCTCAAGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTGCAAAGAAGACCAACAAAACATGAAGGTTAA | 3798 | 0.4487 | MGGGSGDSGDGDHNNSISMVVKNKKSGSIRSIFMHADGLDMFLMIFGLIGAIGDGLGTPLVLFITSKIMNNIGNFSGGIDSTFLDSINKNSLVLLYLACGSFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVSSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVASYIVGFALLWRLTLVGFPFVVLLVIPGFMYGRTLMGLASKMREEYDKAGTVAEQAISSIRTVYSFVGESKTIDAFFDALQGSVKLGLRQGLAKGIAIGSNGVVFAIWAFISYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYLSEASTAGERIMEVIKRVPKIDSDNMGGEILEEVCGEVEFEDVKFVYPSRPDSVILKEFSLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIHRLQLKWLRSQMGLVSQEPALFATTIKENILFGREDATEEEVLQAAKASNAHNFISQLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHHELIQNDNGLYTSLVRLQQAKDEREDTPFHPLPPPSSLSSSSISNKDNHNTSSRRLSLVSRSSSANSIPRGDDVVEDVVEEDMKLPLPSFRRLLALNIPEWKQACMGCLNAVLFGAIQPVYAFSMGSVISVYFLPDHDEIKEKTRIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQERILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFKGIISAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDETDGHKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIRIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVAIDGRDIKQYHLRSLRKHIGLVSQEPTLFGGSIRENIAYGACNKVDESEIIEAARAANAHDFIASLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALDRVMVGRTSVVVAHRLSTIQNCDQIAVLDKGKVVEKGTHSSLLAQGPSGAYYSLVSLQRRPTKHEG | 1265 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium11136g00002 | 1265 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 700 | 981 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vium11136g00002 | 1265 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 363 | 607 | IPR027417 | - | |
Vium11136g00002 | 1265 | FunFam | Putative ABC transporter B family member 8 | 659 | 1004 | - | - | |
Vium11136g00002 | 1265 | CDD | ABC_MTABC3_MDL1_MDL2 | 369 | 607 | - | - | |
Vium11136g00002 | 1265 | CDD | ABC_MTABC3_MDL1_MDL2 | 1017 | 1257 | - | - | |
Vium11136g00002 | 1265 | Gene3D | - | 367 | 639 | IPR027417 | - | |
Vium11136g00002 | 1265 | SMART | AAA_5 | 1044 | 1237 | IPR003593 | GO:0016887 | |
Vium11136g00002 | 1265 | SMART | AAA_5 | 396 | 670 | IPR003593 | GO:0016887 | |
Vium11136g00002 | 1265 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 683 | 999 | - | - | |
Vium11136g00002 | 1265 | SUPERFAMILY | ABC transporter transmembrane region | 675 | 1000 | IPR036640 | GO:0005524|GO:0016020 | |
Vium11136g00002 | 1265 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1008 | 1257 | IPR027417 | - | |
Vium11136g00002 | 1265 | Pfam | ABC transporter | 387 | 536 | IPR003439 | GO:0005524 | |
Vium11136g00002 | 1265 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 369 | 605 | IPR003439 | GO:0005524 | |
Vium11136g00002 | 1265 | MobiDBLite | consensus disorder prediction | 625 | 658 | - | - | |
Vium11136g00002 | 1265 | ProSitePatterns | ABC transporters family signature. | 508 | 522 | IPR017871 | GO:0005524|GO:0016887 | |
Vium11136g00002 | 1265 | MobiDBLite | consensus disorder prediction | 611 | 660 | - | - | |
Vium11136g00002 | 1265 | Pfam | ABC transporter transmembrane region | 44 | 311 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vium11136g00002 | 1265 | Pfam | ABC transporter transmembrane region | 695 | 963 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vium11136g00002 | 1265 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 44 | 342 | - | - | |
Vium11136g00002 | 1265 | ProSitePatterns | ABC transporters family signature. | 1157 | 1171 | IPR017871 | GO:0005524|GO:0016887 | |
Vium11136g00002 | 1265 | SUPERFAMILY | ABC transporter transmembrane region | 40 | 353 | IPR036640 | GO:0005524|GO:0016020 | |
Vium11136g00002 | 1265 | Gene3D | ABC transporter type 1, transmembrane domain | 93 | 990 | IPR036640 | GO:0005524|GO:0016020 | |
Vium11136g00002 | 1265 | PANTHER | ABC TRANSPORTER B FAMILY | 22 | 745 | IPR039421 | - | |
Vium11136g00002 | 1265 | FunFam | ABC transporter B family member 4 | 359 | 614 | - | - | |
Vium11136g00002 | 1265 | FunFam | ABC transporter B family member 4 | 1007 | 1263 | - | - | |
Vium11136g00002 | 1265 | Pfam | ABC transporter | 1037 | 1185 | IPR003439 | GO:0005524 | |
Vium11136g00002 | 1265 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1017 | 1254 | IPR003439 | GO:0005524 | |
Vium11136g00002 | 1265 | FunFam | ABC transporter B family member 1 | 31 | 365 | - | - | |
Vium11136g00002 | 1265 | Gene3D | - | 1007 | 1264 | IPR027417 | - | |
Vium11136g00002 | 1265 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 45 | 334 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium11136g00002 | Vium-Chr11136 | 44112 | 51294 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium11136g00002 | 7 | 1258 | Calmodulin-binding Proteins | AT2G36910 | 44.733 | 0.0 | 1073 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium11136g00002 | K05658 | - | gmx:100807709 | 2132.45 |