Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11132g00003 ATGCGGTTTCTCCTCATCTCTGTAGCAATGAATGCTCTATTTAAAGGAAGCTTCCTATTTCAAAAACACACAGCCTTAGCTAAGTCTCAAATGGATTTCGTTCTAAATTACCTGAATTCCACTACCATTGGACTTCTGTCTCTAATCCTCTTCTGTTTATTTCTGTACAATCCCTTCAAATTTCGTCAAGGCAAAGAGCCTCCCACAGTTGCAGGAGCATGGCCAATAATTGGTCATCTTCTACTGTTGACTCGTTCAAAGGCACCTCATAAAACTTTGGGTGCTTTGGCTGAAAAATACGGACCCATCTTCACCATCCAACTTGGTTCCAAAAAGACTGTGGTAATCAACAACTGGGAAATAGCAAAGGAATGCTTCACCACAAACGACACGGTGATTTCCTCTCGCCCCAAGCTTGTTGCCGTGGAACTCATGGGCTACAACACTGCCATGTTTGGCTTTGCACCCTATGGTCCCTATTGGCGCGAGCTACGAAAGATTACATCTTCAGAGATCATTTCCTCTCGTCGAGTGGATCAACTGCAGCATGTTCGTGTCGCAGAACTTCAAGACTCGATCAAGGAGTTGTATAATCTTTGGCGTAGACAAAAGGGCGAGTCTGGCTATGCCTTGGTGGAGCTGAAGCAATGGTTTTCTCACTTGGTTTTCAACATGATCCTGAGAATGGTCGATGGGAAGAGATATTTTGACGGTGAAAACTCGGACGACGAGAAGGCACAGAGATTTGTGAAAGCTGTGGAGGAATTCGTGCGTCTGTTGGGGTTGTTCGCAGTGGGAGATGCTATTCCTTGGTTGAGATGGCTTGATTTTGGAGGCCATGAGAAAGCCATGAAAGAAACTGCCGAAGAATTGTATAGTATTTTAGATGAGAAGGTGGAGGAACATAGACAAAAGAAAGGTTTGGGTGAGAAGGTTGATGAATTTCAAGATTTCATTGATACGATGATTTCGTTGTTTGATGGAAGAACTATTGGTGGGTTTGATGGAGATACCCTGACCAAATCCACTGTGCTGTCAGTGATTTCAGGAGGAACCGACACGACTAATACTACTCTTACGTGGGCAATATCTTTGATATTGGCAAATTCTTCTGTATTGAAAAAAGTTAAAAACGAACTAGACATTCAAATTGGAAAAGAGAAATTGGTGAGTGTGTCAGATATAAGTAAGTTAACATATCTTCAAGCCATAGTCAAAGAAACTCTGAGATTGTATCCTGCTGGTCCTCTCTTGGCACCTCGTGAATTCACAGAGAATTGCACTTTAAGTGGTTATAACATAAAAAAAGGAACTCGTCTGATCACAAATGCTTGGAAGATTCAGACAGATAGCAATGTTTGGGAAGATCCATTGGAGTTCAAACCAGAAAGGTTCCTAACAACTCACAAAGATGTTGAAATGAAAGGTCGACATTTTGAGTTATTACCATTTGGAAGTGGTAGAAGAATGTGTCCAGGAGTATCTTTTGGCCTTCAAATGGTGCATTTTGTTCTTGCTTCTTTTTTACATTCTTTTGAAATTCTAAGTCCATCACCTGATCCTATTGATATGACTGAAACCTTTGGATTAACCAACACCAAAACCACTCCGGTTGAGATTCTTGTTAAGCCACGTCTACCTTTTAATTGTTATGAAAACCTTTAA 1665 0.412 MRFLLISVAMNALFKGSFLFQKHTALAKSQMDFVLNYLNSTTIGLLSLILFCLFLYNPFKFRQGKEPPTVAGAWPIIGHLLLLTRSKAPHKTLGALAEKYGPIFTIQLGSKKTVVINNWEIAKECFTTNDTVISSRPKLVAVELMGYNTAMFGFAPYGPYWRELRKITSSEIISSRRVDQLQHVRVAELQDSIKELYNLWRRQKGESGYALVELKQWFSHLVFNMILRMVDGKRYFDGENSDDEKAQRFVKAVEEFVRLLGLFAVGDAIPWLRWLDFGGHEKAMKETAEELYSILDEKVEEHRQKKGLGEKVDEFQDFIDTMISLFDGRTIGGFDGDTLTKSTVLSVISGGTDTTNTTLTWAISLILANSSVLKKVKNELDIQIGKEKLVSVSDISKLTYLQAIVKETLRLYPAGPLLAPREFTENCTLSGYNIKKGTRLITNAWKIQTDSNVWEDPLEFKPERFLTTHKDVEMKGRHFELLPFGSGRRMCPGVSFGLQMVHFVLASFLHSFEILSPSPDPIDMTETFGLTNTKTTPVEILVKPRLPFNCYENL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11132g00003 554 FunFam Cytochrome P450 82C4 59 543 - -
Vium11132g00003 554 Gene3D Cytochrome P450 60 548 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 443 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 97 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 339 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 402 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 121 142 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 221 239 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 481 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 491 514 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS E-class P450 group I signature 359 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 484 493 IPR017972 GO:0005506|GO:0016705
Vium11132g00003 554 Coils Coil 285 305 - -
Vium11132g00003 554 Pfam Cytochrome P450 71 532 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS P450 superfamily signature 482 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS P450 superfamily signature 350 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 PRINTS P450 superfamily signature 403 414 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium11132g00003 554 CDD CYP82 101 545 - -
Vium11132g00003 554 PANTHER CYTOCHROME P450 82C3-RELATED 50 551 - -
Vium11132g00003 554 SUPERFAMILY Cytochrome P450 68 545 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11132g00003 Vium-Chr11132 24962 28392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11132g00003 68 546 Cytochrome P450 AT4G31940 49.487 7.90e-175 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11132g00003 - - gmx:100805047 780.4