Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11127g00008 ATGGAGGTGATGTGGGTCAAAAGTCATGGAAGAATTTTTGTGGGAAGGGTGTTGTTTCTCTTGGTATTGTTCTTGTGGATTCAGACGCAGGCAGTGGTGGGAAGGACAAGAACTAATGTCACAAACTCTTCTACTTCTTCGACACCGAGAGTTTTCAGAGTTGGAGCACTGTTCAGTCTTGATTCTATAATTGGAAGATCGGCTGAACCTGCAATCGTGGCTGCTTTCGAAGATGTTAATGCTGATTCAAGCATTCTCCCTGGCATTAAACTTGAAGCTGCTTTGCATGATACAAATTGCAGTGGCTTTGCTGGAACAATGGAAGCTTTGCAGTTAATGGAGGAAGAAGTGATTGCTGCAATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTGGTCAATGAACTCCATGTCCCTCTTATTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTATTATCAGATGTATGCAATTGCAGATTTGGTTGATTATTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTTGGAGATGCTCTAACAAAAAAACGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCCTGGAGCACCCAGGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAATCAAGGGTCTTCGTTTTGCACGTTAATCCTGAAACTGGTTTGAGCATTTTTTCTATTGCTCAGAAGCTGGGAATGATGGACAGTGGCTATGTATGGATTGCAACAGATTCGCTTGCTTCAGCACTTGATTCATTAGACCCAATTGATCCTAAGATATTGAATCTCCTACAAGGGGTTTTGGCTTTACGTCATCACACTCCTGATACTAATGAAAAGAAGAATTTTCTTTCCAGAATGAAGAGACTGAGAAACAAGGAGACTCCAAGCTTCAATTCCTATGCAGTGTATGCATATGATACAGTTTGGTTAGTAGCCCGGGCTCTTGATACTTTTTTAAACGAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTAAGTTAAGCGATACAAATGGAAGCACACTGCATTTAGAATCACTTCATGTTTTTGATGAAGGCCCTACTTTTCTGCAGACAGTTTTGGGAACCAACTTCACTGGTCTGACAGGACTAGTTCAGTTTGATAATGAAAGGAATAGAATTCGTCCAGCATATGATATCTTGAACATAGGTGGATCTGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCTCCAGAAATTCTGTATAAGAAGCCACCTAACACTTCAACAAGCAGCCAGCAACTATACGGTGTTATTTGGCCTGGAGAAACTGCAGCAAAACCAAGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGAGAATTGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGAGTAAGAGGCTATTGCATTGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCACGACAATACATATTATTTGGACCTGGTGATAGAAATCCTAGCTACGATGACCTTGCAAGTCAAGTTGCACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTCCCCAACAGGACAAGGTTTTTGGATTTTACACAACCTTACATAGAATCAGGCCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCATTCACTCCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATCCTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGTGGTAAACCAAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTTGGGAGATTAGTTCTAATCATATGGCTTTTTGTGGTGCTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCAATCCTCACAGTGCAGCAACTGTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAAGCAATCAACCCATTGGAATTCAAGAAGGGTCGTTTGCACGAAAGTATTTGACAGAAGAACTCAACATACAACCATCAAGGATAGTTACATTGAAAAATATGGAGGCATACATTGATGCTCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTAGCTGTTGTTGATGAGCTTCCTTATATTGAAATACTAATGTCAAATACCAACTGCAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAAATCCATGACAAATGGCTCTTAAAACAGGATTGTTCTACACAAGAAAGTGATGTGGATTTAAACCAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTGGTTTGTGGCACTGCATGTTTCCTTGCTTTGACTGCATTCTTCATTAGAGTTCTATTTCAGTACACAAAATTCAGCCCAGAACCTGAGCAACATGATGAGGAAAATTCACCAGACAGGCCTAAAGGTAAAGGACCTTTCGGAACCACTAGTAGCTTCAGAGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGAAGACGCAGTCTGAGCTCAGATGGTCAATCTTCTTCATCCGCCTAA 2841 0.4168 MEVMWVKSHGRIFVGRVLFLLVLFLWIQTQAVVGRTRTNVTNSSTSSTPRVFRVGALFSLDSIIGRSAEPAIVAAFEDVNADSSILPGIKLEAALHDTNCSGFAGTMEALQLMEEEVIAAIGPQSSGIAHVISHVVNELHVPLISFGATDPSLSSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREIIAIYVDDDNGRNGISVLGDALTKKRAKISYKAAFPPGAPRKDISDLLNGVNLMESRVFVLHVNPETGLSIFSIAQKLGMMDSGYVWIATDSLASALDSLDPIDPKILNLLQGVLALRHHTPDTNEKKNFLSRMKRLRNKETPSFNSYAVYAYDTVWLVARALDTFLNEGGVVSFSSDPKLSDTNGSTLHLESLHVFDEGPTFLQTVLGTNFTGLTGLVQFDNERNRIRPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYGVIWPGETAAKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRQYILFGPGDRNPSYDDLASQVALNNYDAAVGDVTIVPNRTRFLDFTQPYIESGLVVVVPVKEIKSSPWSFLKPFTPQMWCVTGAFFILVGTVVWILEHRHNPEFRGKPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKQDCSTQESDVDLNQLSLSSFWGLFLVCGTACFLALTAFFIRVLFQYTKFSPEPEQHDEENSPDRPKGKGPFGTTSSFRDLIYFVDKKEKEIKEILKQKSKKRRRSLSSDGQSSSSA 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11127g00008 946 FunFam Glutamate receptor 598 728 - -
Vium11127g00008 946 Pfam Ligand-gated ion channel 830 861 IPR001320 GO:0015276|GO:0016020
Vium11127g00008 946 Gene3D - 482 597 - -
Vium11127g00008 946 Coils Coil 914 934 - -
Vium11127g00008 946 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Vium11127g00008 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 54 891 IPR015683 -
Vium11127g00008 946 CDD PBP1_GABAb_receptor_plant 53 444 IPR044440 -
Vium11127g00008 946 MobiDBLite consensus disorder prediction 881 895 - -
Vium11127g00008 946 SMART GluR_14 488 830 IPR001320 GO:0015276|GO:0016020
Vium11127g00008 946 PIRSF IGluLR_plant 12 946 IPR017103 -
Vium11127g00008 946 Gene3D - 70 415 - -
Vium11127g00008 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Vium11127g00008 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Vium11127g00008 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Vium11127g00008 946 Pfam Receptor family ligand binding region 69 424 IPR001828 -
Vium11127g00008 946 CDD GluR_Plant 485 828 - -
Vium11127g00008 946 SUPERFAMILY Periplasmic binding protein-like II 463 829 - -
Vium11127g00008 946 MobiDBLite consensus disorder prediction 926 946 - -
Vium11127g00008 946 Gene3D - 167 440 - -
Vium11127g00008 946 Pfam Bacterial extracellular solute-binding proteins, family 3 544 829 IPR001638 -
Vium11127g00008 946 MobiDBLite consensus disorder prediction 881 905 - -
Vium11127g00008 946 FunFam Glutamate receptor 482 598 - -
Vium11127g00008 946 FunFam Glutamate receptor 724 832 - -
Vium11127g00008 946 Gene3D - 598 718 - -
Vium11127g00008 946 Gene3D - 719 832 - -
Vium11127g00008 946 FunFam Glutamate receptor 167 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11127g00008 Vium-Chr11127 78305 83037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11127g00008 49 795 Ion Channels AT1G05200 68.541 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11127g00008 K05387 - gmx:100799912 1632.08