Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11127g00005 ATGAAGAAATTCATGGTTTTGCACCTTGTGACATGGATTTGGATATGTGGTGTTGCTCACAGCACAACGCCTGCCAGTGTGAACATTGGTGCGGTTTTTGCTTTCGATTCGGTCATAGGTAGAGTTGCGAAGGAAGCTATGAAAATGGCCGTTTCTGATGTCAACGAGGACCCCACAGTTCTTAACGGAACCGAACTCAACTTGATAATGAAGGATGCCATGTGCAATGCTTTTCTGGGATCAATTGGAGCTTTTCAGGTACTTGAGAAAGGGGTTGCAGCCATCATTGGTCCCCAGTCATCCGCTGTAGCTCACACGGTTTCTCAAATTGCTGATGCTCTCCAAGTTCCTCTTGTTTCATATGCTGCCACTGATCCAACCTTGTCCTCCCTCCAGTTTCCTTTCTTTATTCGTTCTACGCAAAGTGACTTGGCACAAATGACTGCAATGGCTGATCTTATTGACTTTAATGGATGGAAAGAGGTCATTGTTGTATTCTTAGACGATGATTATGGAAGAAATGGAGTATCTGCTTTGAGTGATGAACTTGAAAAAAGGAGATTGAAAATTTCTTATAAACTTCCTTTGAGTATTAAGTTTGATCCGGATGAAATCACCACCTTACTCAATCAATCTAAATTGATTGGTCCTCGTGTGTATGTTATTCATGCCAACCCTGATCCGAGCTTGAGAATTTTTTCTATTGCCCATAAACTTCAAATGATGGCAAAGGATTACGTGTGGCTTGTCACGGATTGGCTCTCAGCTACACTAGATTCATTATCCCCAGTGAATCGAACCTCTTTCAGTGTTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTTTGGATTCCCGAAAAAAGAGAGATTTTGTTTCTCGGTGGATGAAAAGGCAAAAAGAGGGATTGACAAATACTAGTTTGAACTCCTATGGATTTTCTGCTTATGACACGGTTTGGGCAATTGCACTTTCAATTGATAAATTCCTCAAAGTAAATAATTTTACCTTCATGCTTCATGATAACTATAAGCTATCTCATACAGAAGGAATTGGCGTTCAGCTTGACAAACTCAAAGTCTTCACTGGTGGATCTGATCTGGTCAAGATATTATTACAATCAAATTTTACTGGTGTGAGTGGTCAAGTTCTGTTTAATTCTGACAGAAATATTGTGAGTGGTGGTTATGATATTATCAATATCAATCAGTTGGGAATTTCTAGGGTTGGTTTTTGGTCTAATAATTCTGGATTTTCAGTTGTACCCCCTGAGAATCTTAAAAAAAGGGCACACAGCAGGTTTTCCAAAGATCAGAAGCTTGACAACATTACTTGGCCTGGTGGAAAGACAGATCGACCACGTGGCTGGGTGATTGCTGACAATACCAAGCCACTGAGAATTGGAGTGCCAAAAAGAGCAAGTTTTGTTGAATTTGTAACTGAAGTGCCAACTAGTCATGAAATTCGGGGGTATTGCATCGATGTGTTCAAGAAAGCCCTAGAATTTATTCCATATGAAGTTCCCTATGTATTCAAGCCTTTCGGCAATGGTAAAGCAAATCCCAATTATGACGAACTTGTCAAAATGGTTGCTGATAATGTATATGATGCTGTTGTTGGAGACATTGCAATTGTGACAAACCGTACAAAGATTGTGGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAATCAGGATCAAGTGCTTGGGTGTTCCTCAAACCATTTACAGCAGATATGTGGTGTGCTACGGCTGCCTCATTTTTGGTGATTGGAATTGTTATATGGATTCTTGAGCACCGAATCAATAATGACTTCCGTGGTCCTCCTAAGAAGCAAATTGTAACAATGTTAATGTTCAGCCTCTCAACCCTGTTTAAGAAAAATCAGGAAGATACCGTAAGCTCCCTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTGTTGATGGTGATCACGGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACAGGAATTGAGAGCTTGATTGCAAGTAGCTGGCCTATAGGGTACCAAGTGGGATCATTTGCTTACAGCTATCTGGCAGATAATCTTTATATTTCAAAATCAAGGCTTGTTTCATTAGGCTCCCCTGAGGAATATGCTTTAGCACTGCAGAAGGGACCTTCTGAAGGAGGGGTGGCAGCTATTGTAGATGAGCTTCCGTATGTTGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATCATTGGACAGCCATTCGCAAGAAACAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTTTTGCCTTTGACATGTCTACAGCAATTTTGAGACTTTCTGAGAATGGGGATCTTCGTAGGATACAGGAGAGGTGGTTCTGTAAAATGGGATGTCCTGAAGAAAGGACAAGCAACTCCAAGCCTGACCAGCTTCACTTGATTAGCTTTTGGGGCCTGTATCTTTCATGTGGTGTTGTCTCTCTTGCTGCACTCGTTTTGTTTCTGCTGCGAATGATTCGGCAATACGCCCGCTTCAAAAAAAAGCAAAAGGATATTGCTTCTTCATCCTCAGAACAACCATCAGGCAGTCACTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTTGCTCCATCTGACAATCATCACAACCCCAACTGA 2730 0.4117 MKKFMVLHLVTWIWICGVAHSTTPASVNIGAVFAFDSVIGRVAKEAMKMAVSDVNEDPTVLNGTELNLIMKDAMCNAFLGSIGAFQVLEKGVAAIIGPQSSAVAHTVSQIADALQVPLVSYAATDPTLSSLQFPFFIRSTQSDLAQMTAMADLIDFNGWKEVIVVFLDDDYGRNGVSALSDELEKRRLKISYKLPLSIKFDPDEITTLLNQSKLIGPRVYVIHANPDPSLRIFSIAHKLQMMAKDYVWLVTDWLSATLDSLSPVNRTSFSVLQGVVGLRQHILDSRKKRDFVSRWMKRQKEGLTNTSLNSYGFSAYDTVWAIALSIDKFLKVNNFTFMLHDNYKLSHTEGIGVQLDKLKVFTGGSDLVKILLQSNFTGVSGQVLFNSDRNIVSGGYDIININQLGISRVGFWSNNSGFSVVPPENLKKRAHSRFSKDQKLDNITWPGGKTDRPRGWVIADNTKPLRIGVPKRASFVEFVTEVPTSHEIRGYCIDVFKKALEFIPYEVPYVFKPFGNGKANPNYDELVKMVADNVYDAVVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINKSGSSAWVFLKPFTADMWCATAASFLVIGIVIWILEHRINNDFRGPPKKQIVTMLMFSLSTLFKKNQEDTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIESLIASSWPIGYQVGSFAYSYLADNLYISKSRLVSLGSPEEYALALQKGPSEGGVAAIVDELPYVELFLSKETDFGIIGQPFARNSWGFAFQRESPFAFDMSTAILRLSENGDLRRIQERWFCKMGCPEERTSNSKPDQLHLISFWGLYLSCGVVSLAALVLFLLRMIRQYARFKKKQKDIASSSSEQPSGSHCSQVVVNFFNFIDEKEEAIKKMFAPSDNHHNPN 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11127g00005 909 Gene3D - 735 770 - -
Vium11127g00005 909 FunFam Glutamate receptor 576 714 - -
Vium11127g00005 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Vium11127g00005 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Vium11127g00005 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 231 254 - -
Vium11127g00005 909 Gene3D - 142 418 - -
Vium11127g00005 909 FunFam Glutamate receptor 142 300 - -
Vium11127g00005 909 Gene3D - 771 805 - -
Vium11127g00005 909 CDD GluR_Plant 463 805 - -
Vium11127g00005 909 Pfam Ligand-gated ion channel 806 837 IPR001320 GO:0015276|GO:0016020
Vium11127g00005 909 SMART GluR_14 466 807 IPR001320 GO:0015276|GO:0016020
Vium11127g00005 909 SUPERFAMILY Periplasmic binding protein-like II 444 805 - -
Vium11127g00005 909 PIRSF IGluLR_plant 1 909 IPR017103 -
Vium11127g00005 909 Gene3D - 576 704 - -
Vium11127g00005 909 Gene3D - 462 575 - -
Vium11127g00005 909 FunFam Glutamate receptor 702 809 - -
Vium11127g00005 909 CDD PBP1_GABAb_receptor_plant 28 422 IPR044440 -
Vium11127g00005 909 Gene3D - 45 393 - -
Vium11127g00005 909 Pfam Receptor family ligand binding region 44 402 IPR001828 -
Vium11127g00005 909 FunFam Glutamate receptor 460 576 - -
Vium11127g00005 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 865 IPR015683 -
Vium11127g00005 909 Pfam Bacterial extracellular solute-binding proteins, family 3 466 805 IPR001638 -
Vium11127g00005 909 SUPERFAMILY Periplasmic binding protein-like I 23 456 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11127g00005 Vium-Chr11127 65806 71245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11127g00005 24 907 Ion Channels AT2G32400 56.935 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11127g00005 K05387 - gmx:100784247 1587.78