Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11125g00002 ATGGGACTGCCGCTGATTTTCCTGCTAATTCAGCTGCATTTAGCTGTCTGCACTCAGCAGATTCATGAATATGCAGCCACCGAACTGCAACATTCCAGTGACAGAAGCCATTTTAGTATTGCAATCCCACCAAAGTCATCTTCTGAAGGTCATTCAAGTATTGCACATTCACCTTCCAAGTCATCTTCTGGGGTACCTGCAAGCATTGCACTTTCACCTTCCAAGTCAATTCACAAAGCTCCTACAATCATATGGACACATGGTTCTGTGGATTCCCCAATCTTGCATCATAAGCATCACTATTCTAAAAGAAAGTCCCACAATCCAACTCTAGCACCAATCTATGCAGTTCAGCCTCCAACATACAGCCATCAAGGCCCTTCGGTCTTCAAATCACGACCCCCTTTCTCTTCACCAAATGTTAAAGATATTCATGCCCCGGCCCCTGCACCATCACCAGCTATTGTACCAAGTCACTTCAATGTACCCTCTACTTCACCAACAATTTCTCCTCTAGGTTCATCATTGCAGAAGAAAAAGACTCCACCACCAGCATATGAATTTGTTCTGCCACCACCACCTCCTAATAAGTATTGCTTGTCGATGACTTGCTCAGAGCCCTTGACGTATACACCTCCTGGGTCACCTTGTGGTTGTGTATGGCCTCTTCAGGTTAAAATCCATATCAACATTGCAATATACAAGTTTTTTCCATTGGTTGCAGAGCTAGCCAAGGAAATTGCAGCAAGTGTTTTACTGAACTATACCCAGGTTCGCATTGTGGAAGCTGATGCAGCTAGTCAGCAACTGGAGAAAACCACTGTTCTCATAGACTTAGTACCCAAAGGAGTAAAATTTGATGATACCACTGCATTTTTAATATATAAGAAATTCTGGCGCAGGGAGATTCTGATAGATTCTTCAGTCTTTGGTGCTTATGAAGTTCTCTATGTTCATTATCCAGGTCTTCCTCCATCTCCACCATCAACTCCCTCAGACGCTTCTGTTATAGATGATCAGCCAAATCCAGGACATGACAACAATGGAATGATGATGAAACCTTTAGGAGTAGATGTCCCAAAGAAGAAAAAAGAAGGGAGTAATGGAAGAATGATTATTATAATTGTGTTGTCATCAGTTACTGCTTTTGTTGTATTCATTGGTCTTGCTTGGATCTGCGCGCTGAAATGCTGTGCCTATGTTCATGAACACAAACCATTTCCAGATGGTTTAATTTCATCCTCTTCAAAACAATCAAGGGCTGCTAGGTCATTGCCTCGCGGGATCAGGTCAGGTTCTGGATCACAGTCTTTCAATGCTGGAACAATAACATACACAGGGTCTGCTAAGATTTTTACTTTGAATGACTTAGAGAAAGCAACAAATAACTTTGATTCTTCAAGAATATTAGGAGAAGGTGGTTTTGGACTTGTTTACAAAGGTGTTCTAAATGATGGGAGGGATATAGCTGTGAAGGTTCTCAAAAGAGATGATCAGCGTGGTGGTCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGTCTACACCATCGAAATCTAGTTACATTGTTTGGTATATGCATAGAGAAACAGACTCGTTGCTTAGTTTATGAGCTTGTCCCTAATGGAAGTTTGGAATCCCACTTACATGGAGCTGACAAGGAAACTGGTCCCTTGGATTGGAATGCACGGATGAAGATTGCTCTTGGTGCAGCTCGGGGTCTGGCCTATCTGCATGAAGATTCAAATCCATGTGTCATACATCGGGATTTCAAGGCCAGCAACATCTTGTTGGAGTATGATTTTACACCCAAGGTCTCAGATTTTGGACTGGCTAGAACAGCATTGGATGAGAGAAACAAGCACATTTCCACACATGTTATGGGAACATTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGATGTTTACAGTTATGGAGTTGTACTCCTTGAGCTTCTAACTGGAAGAAAGCCCGTGGAGTTGTCACAACCACCAGGTCAAGAAAATCTTGTGACATGGGTTCGTCCACTTCTCACTAGTAAGGAGGGTTTGCAGATGATCATAGACCCAGTTGTAAAGCCTAACATTTCCGTTGATATTGTAGTTAAAGTTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTCTCACAGCGTCCTTTCATGGGAGAAGTTGTTCAGGCCTTGAAACTGGTGTGTAGTGAGGTTGAGGAAACAGACTATTTAAGATCAATGAGTTACCAAGAGGGTTTTCTAACTGATGTGGAAGGAAATTTTTCTGAAGCTTCAGGTGAAAGAGTGGAATTTTCAGAGTATCAAAAAGCTCTATCTGGCTACCAATCTGGTGAAGAAAAGGTAGAATTATCAGCATCAGAGTTTAGTGCTTCAGGTCAGGAATTTCAGTCATTCAGGAGGTATTCTCGATCAGGGCCTCTAACCATTGGGAAGAAAAGGCAGTTCTGGCAGAAGTTGAGAAGTTTGTCTGGTGGTAGTACCAGTGAACATGGATTTTCATCAAAACTATGGTCGGGATCCCATTAA 2565 0.425 MGLPLIFLLIQLHLAVCTQQIHEYAATELQHSSDRSHFSIAIPPKSSSEGHSSIAHSPSKSSSGVPASIALSPSKSIHKAPTIIWTHGSVDSPILHHKHHYSKRKSHNPTLAPIYAVQPPTYSHQGPSVFKSRPPFSSPNVKDIHAPAPAPSPAIVPSHFNVPSTSPTISPLGSSLQKKKTPPPAYEFVLPPPPPNKYCLSMTCSEPLTYTPPGSPCGCVWPLQVKIHINIAIYKFFPLVAELAKEIAASVLLNYTQVRIVEADAASQQLEKTTVLIDLVPKGVKFDDTTAFLIYKKFWRREILIDSSVFGAYEVLYVHYPGLPPSPPSTPSDASVIDDQPNPGHDNNGMMMKPLGVDVPKKKKEGSNGRMIIIIVLSSVTAFVVFIGLAWICALKCCAYVHEHKPFPDGLISSSSKQSRAARSLPRGIRSGSGSQSFNAGTITYTGSAKIFTLNDLEKATNNFDSSRILGEGGFGLVYKGVLNDGRDIAVKVLKRDDQRGGREFLAEVEMLSRLHHRNLVTLFGICIEKQTRCLVYELVPNGSLESHLHGADKETGPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKASNILLEYDFTPKVSDFGLARTALDERNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVELSQPPGQENLVTWVRPLLTSKEGLQMIIDPVVKPNISVDIVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEVEETDYLRSMSYQEGFLTDVEGNFSEASGERVEFSEYQKALSGYQSGEEKVELSASEFSASGQEFQSFRRYSRSGPLTIGKKRQFWQKLRSLSGGSTSEHGFSSKLWSGSH 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11125g00002 854 CDD STKc_IRAK 470 738 - -
Vium11125g00002 854 ProSiteProfiles Protein kinase domain profile. 464 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11125g00002 854 PANTHER OS01G0750732 PROTEIN 191 758 - -
Vium11125g00002 854 SUPERFAMILY Protein kinase-like (PK-like) 444 737 IPR011009 -
Vium11125g00002 854 Gene3D Phosphorylase Kinase; domain 1 437 539 - -
Vium11125g00002 854 MobiDBLite consensus disorder prediction 327 352 - -
Vium11125g00002 854 ProSitePatterns Protein kinases ATP-binding region signature. 470 492 IPR017441 GO:0005524
Vium11125g00002 854 Gene3D Transferase(Phosphotransferase) domain 1 540 757 - -
Vium11125g00002 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Vium11125g00002 854 FunFam receptor-like serine/threonine-protein kinase ALE2 437 539 - -
Vium11125g00002 854 FunFam Receptor-like serine/threonine-protein kinase ALE2 540 755 - -
Vium11125g00002 854 Pfam Protein tyrosine and serine/threonine kinase 467 737 IPR001245 GO:0004672|GO:0006468
Vium11125g00002 854 MobiDBLite consensus disorder prediction 38 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11125g00002 Vium-Chr11125 4505 10740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11125g00002 196 854 Receptor kinase-like Gene Family AT5G56890 59.644 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium11125g00002 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11125g00002 - - gmx:100814040 1467.6