Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11125g00001 ATGGGACTGCCGCTGATTTTCCTGCTAATTCAGCTGCATTTAGCTGTCTGCACTCAGCAGATTCATGAATATGCAGCCACCGAACTGCAACATTCCAGTGACAGAAGCCATTTTAGTATTGCAATCCCACCAAAGTCATCTTCTGAAGGTCATTCAAGTATTGCACATTCACCTTCCAAGTCATCTTCTGGGGTACCTGCAAGCATTGCACTTTCACCTTCCAAGTCAATTCACAAAGCTCCTACAATCATATGGACACATGGTTCTGTGGATTCCCCAATCTTGCATCATAAGCATCACTATTCTAAAAGAAAGTCCCACAATCCAACTCTAGCACCAATCTATGCAGTTCAGCCTCCAACATACAGCCATCAAGGCCCTTCGGTCTTCAAATCACGACCCCCTTTCTCTTCACCAAATGTTAAAGATATTCATGCCCCGGCCCCTGCACCATCACCAGCTATTGTACCAAGTCACTTCAATGTACCCTCTACTTCACCAACAATTTCTCCTCTAGGTTCATCATTGCAGAAGAAAAAGACTCCACCACCAGCATATGAATTTGTTCTGCCACCACCACCTCCTAATAAGTATTGCTTGTCGATGACTTGCTCAGAGCCCTTGACGTATACACCTCCTGGGTCACCTTGTGGTTGTGTATGGCCTCTTCAGGTTAAAATCCATATCAACATTGCAATATACAAGTTTTTTCCATTGGTTGCAGAGCTAGCCAAGGAAATTGCAGCAAGTGTTTTACTGAACTATACCCAGGTTCGCATTGTGGAAGCTGATGCAGCTAGTCAGCAACTGGAGAAAACCACTGTTCTCATAGACTTAGTACCCAAAGGAGTAAAATTTGATGATACCACTGCATTTTTAATATATAAGAAATTCTGGCGCAGGGAGATTCTGATAGATTCTTCAGTCTTTGGTGCTTATGAAGTTCTCTATGTTCATTATCCAGGTCTTCCTCCATCTCCACCATCAACTCCCTCAGACGCTTCTGTTATAGATGATCAGCCAAATCCAGGACATGACAACAATGGAATGATGATGAAACCTTTAGGAGTAGATGTCCCAAAGAAGAAAAAAGAAGGGAGTAATGGAAGAATGATTATTATAATTGTGTTGTCATCAGTTACTGCTTTTGTTGTATTCATTGGTCTTGCTTGGATCTGCGCGCTGAAATGCTGTGCCTATGTTCATGAACACAAACCATTTCCAGATGGTTTAATTTCATCCTCTTCAAAACAATCAACAGGGGCTGCTAGGTCATTGCCTCGCGGGATCAGGTCAGGTTCTGGATCACAGTCTTTCAATGCTGGAACAATAACATACACAGGGTCTGCTAAGATTTTTACTTTGAATGACTTAGAGAAAGCAACAAATAACTTTGATTCTTCAAGAATATTAGGAGAAGGTGGTTTTGGACTTGTTTACAAAGGTGTTCTAAATGATGGGAGGGATATAGCTGTGAAGGTTCTCAAAAGAGATGATCAGCGTGGTGGTCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGTCTACACCATCGAAATCTAGTTACATTGTTTGGTATATGCATAGAGAAACAGACTCGTTGCTTAGTTTATGAGCTTGTCCCTAATGGAAGTTTGGAATCCCACTTACATGGAGCTGACAAGGAAACTGGTCCCTTGGATTGGAATGCACGGATGAAGATTGCTCTTGGTGCAGCTCGGGGTCTGGCCTATCTGCATGAAGATTCAAATCCATGTGTCATACATCGGGATTTCAAGGCCAGCAACATCTTGTTGGAGTATGATTTTACACCCAAGGTCTCAGATTTTGGACTGGCTAGAACAGCATTGGATGAGAGAAACAAGCACATTTCCACACATGTTATGGGAACATTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGATGTTTACAGTTATGGAGTTGTACTCCTTGAGCTTCTAACTGGAAGAAAGCCCGTGGAGTTGTCACAACCACCAGGTCAAGAAAATCTTGTGACATGGGTTCGTCCACTTCTCACTAGTAAGGAGGGTTTGCAGATGATCATAGACCCAGTTGTAAAGCCTAACATTTCCGTTGATATTGTAGTTAAAGTTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTCTCACAGCGTCCTTTCATGGGAGAAGTTGTTCAGGCCTTGAAACTGGTGTGTAGTGAGGTTGAGGAAACAGACTATTTAAGATCAATGAGTTACCAAGAGGGTTTTCTAACTGATGTGGAAGGAAATTTTTCTGAAGCTTCAGGTGAAAGAGTGGAATTTTCAGAGTATCAAAAAGCTCTATCTGGCTACCAATCTGGTGAAGAAAAGGTAGAATTATCAGCATCAGAGTTTAGTGCTTCAGGTCAGGAATTTCAGTCATTCAGGAGGTATTCTCGATCAGGGCCTCTAACCATTGGGAAGAAAAGGCAGTTCTGGCAGAAGTTGAGAAGTTTGTCTGGTGGTAGTACCAGTGAACATGGATTTTCATCAAAACTATGGTCGGGATCCCATTAA 2568 0.4252 MGLPLIFLLIQLHLAVCTQQIHEYAATELQHSSDRSHFSIAIPPKSSSEGHSSIAHSPSKSSSGVPASIALSPSKSIHKAPTIIWTHGSVDSPILHHKHHYSKRKSHNPTLAPIYAVQPPTYSHQGPSVFKSRPPFSSPNVKDIHAPAPAPSPAIVPSHFNVPSTSPTISPLGSSLQKKKTPPPAYEFVLPPPPPNKYCLSMTCSEPLTYTPPGSPCGCVWPLQVKIHINIAIYKFFPLVAELAKEIAASVLLNYTQVRIVEADAASQQLEKTTVLIDLVPKGVKFDDTTAFLIYKKFWRREILIDSSVFGAYEVLYVHYPGLPPSPPSTPSDASVIDDQPNPGHDNNGMMMKPLGVDVPKKKKEGSNGRMIIIIVLSSVTAFVVFIGLAWICALKCCAYVHEHKPFPDGLISSSSKQSTGAARSLPRGIRSGSGSQSFNAGTITYTGSAKIFTLNDLEKATNNFDSSRILGEGGFGLVYKGVLNDGRDIAVKVLKRDDQRGGREFLAEVEMLSRLHHRNLVTLFGICIEKQTRCLVYELVPNGSLESHLHGADKETGPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKASNILLEYDFTPKVSDFGLARTALDERNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVELSQPPGQENLVTWVRPLLTSKEGLQMIIDPVVKPNISVDIVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEVEETDYLRSMSYQEGFLTDVEGNFSEASGERVEFSEYQKALSGYQSGEEKVELSASEFSASGQEFQSFRRYSRSGPLTIGKKRQFWQKLRSLSGGSTSEHGFSSKLWSGSH 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11125g00001 855 ProSiteProfiles Protein kinase domain profile. 465 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11125g00001 855 SUPERFAMILY Protein kinase-like (PK-like) 445 738 IPR011009 -
Vium11125g00001 855 FunFam receptor-like serine/threonine-protein kinase ALE2 438 540 - -
Vium11125g00001 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Vium11125g00001 855 Gene3D Transferase(Phosphotransferase) domain 1 541 758 - -
Vium11125g00001 855 PANTHER OS01G0750732 PROTEIN 191 759 - -
Vium11125g00001 855 MobiDBLite consensus disorder prediction 327 352 - -
Vium11125g00001 855 ProSitePatterns Protein kinases ATP-binding region signature. 471 493 IPR017441 GO:0005524
Vium11125g00001 855 FunFam Receptor-like serine/threonine-protein kinase ALE2 541 756 - -
Vium11125g00001 855 Pfam Protein tyrosine and serine/threonine kinase 468 738 IPR001245 GO:0004672|GO:0006468
Vium11125g00001 855 CDD STKc_IRAK 471 739 - -
Vium11125g00001 855 Gene3D Phosphorylase Kinase; domain 1 438 540 - -
Vium11125g00001 855 MobiDBLite consensus disorder prediction 38 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11125g00001 Vium-Chr11125 4504 10740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11125g00001 196 855 Receptor kinase-like Gene Family AT5G56890 59.704 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vium11125g00001 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11125g00001 - - gmx:100814040 1462.59