Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1110g00004 ATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCGCAAGGTCTTGATGGGTTCCTTCGGTGGAAGTAACAATAGTAAGGTAATGGAAAAACCAGATCAAGAGCTTGTGCAGCAGCAGCTGCAACAACAAACCCTCAAGTGCCCTCGTTGTGACTCATCAAACACTAAATTCTGCTACTACAACAATTACAGTTTGTCTCAGCCACGACACTTCTGCAAAGCCTGCAAGCGCTACTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGTGGGTGCAGAAAAAACAAGCGTGTTAAGCGTCCAATGACAAACTCTTGTTCTGCTGCCATTGACACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACCGCCGCTTCGCAACCACAGATCGACACTGCTTCAACCTCGAATCACATCAACCCTTTGTTTTATGGGTTGCCTAGTTGCTCCAGCGATGTGAATCTTCCGCTGTTCCCTAGGTTTGGCTCCAGAATCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTGTGTCCAATGAACCCAGTGAGAATAATAGCTTTAGAAACGGGTTTGGTTCTAATAACGCGCTTCTTTCAAGTTATAATTCCATCTTTGGTTCTTCTTCAAGTTCTACATCCACTGCTCCAGCTTTGTCTTCACTGTTGAGCTCTACTTTGCTTCAACAGAAGTTTATCGGCAGTGGGTTGAAAGATGGTGCTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAACCCCACTAGAGCAGTTGCAAATGCCGAGTGATAACAGTGAGGCAGGGATGGTGTCTTTAAAAGATGTGAAAGTAGAATTAGGACAAAACAGCAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGCATGTGGGCATGTACGATCCTTCGCTTTATTGGAATAATTCAGCAACAGCTTTGGGTGTTTGGAACGATCAAGCTGCGAATATCGGTTCTTAA 1050 0.4581 MSGNCEKMVVIPPTTNQWPQVDDRKVLMGSFGGSNNSKVMEKPDQELVQQQLQQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPMTNSCSAAIDTASSSNSSSALTAASQPQIDTASTSNHINPLFYGLPSCSSDVNLPLFPRFGSRISSSGFDLQLNNALGLGFSSGVVSNEPSENNSFRNGFGSNNALLSSYNSIFGSSSSSTSTAPALSSLLSSTLLQQKFIGSGLKDGADSNTFQHGLGLTPLEQLQMPSDNSEAGMVSLKDVKVELGQNSRLEWNGACQNQIQHVGMYDPSLYWNNSATALGVWNDQAANIGS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1110g00004 349 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Vium1110g00004 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 231 IPR045174 GO:0003700|GO:0006355
Vium1110g00004 349 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Vium1110g00004 349 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1110g00004 Vium-Chr1110 33540 35696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1110g00004 1 349 C2C2-Dof Transcription Factor Family AT1G28310 38.919 2.01e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium1110g00004 zf-Dof 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1110g00004 - - gmx:778098 501.516