Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1110g00003 ATGGAGCAAGGAGGTGGAGAAGGAGGTGACATGAATAAACTACCTCAGGATTCGAGTATGAAGGAGATGCAACAAGGGGATGCACAGCCTCAGGTTCAGGCCCCTCAACAACCCCAAAAGTGTCCTCGATGCGACTCTCTCAACACCAAATTTTGCTATTACAACAACTATAGCTTGTCACAGCCTCGTTACTTCTGCAAAACATGCAGGAGGTACTGGACTCAAGGTGGAACCTTAAGGAACGTTCCCGTCGGTGGTGGTTGCCGCAAGGGGAAGCGCGCCAAGAGTTCCAATCCATCATCGTCGGAGAATTCCTCTTCTCGGTCGCTGCCGCAACAACAACAATCACAAGACGTGGTGGTTCAAACCCAACCACCACCTTTAACAACGGTGGTGAGGGCTAAAGACCCTTCTTCGGTTTTGGCTTCACCTTTGTACCAAAGTGGTGGGTACTTGTCTTCTCTGGCTGCTATGCATTCGCTCAATCCATCATCACATCCTTTTGATCAGTCTCTGAACAGTGACGCCTTGCGTTCTTCCAATTTGGGCCTTCTATCTGGTTTCAATGTTCAGCGGCCAATTGGATCGATTGGTACAATTCGTCCGGCGCAATTGTATCAAATGGGCAGTGGTCAGAGGGAGGTGGCGTCTCTCTATGATCAAGGTTTGGTTAATCCATCCTCCAGCATGGCTAATACCAATACCAATAGCAGTGGTGTTTCTCACCATGATTGGCCTCAGATCTTCATCGGTAATAATACTAATGCCGGCAACAGAGCCTCTGATGCGTCTTTGTGGAGCACCATCAGTACCACTATTGGTGGTAACTCCGAGAGGACTGGTGCTGGTGCTGGTACTGTTTCTGGGTCGTCTTTGGTTCAAAATCAATGGCCTGATATTCCAGGGTATGGCCCTCCACCGTGA 924 0.4935 MEQGGGEGGDMNKLPQDSSMKEMQQGDAQPQVQAPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKSSNPSSSENSSSRSLPQQQQSQDVVVQTQPPPLTTVVRAKDPSSVLASPLYQSGGYLSSLAAMHSLNPSSHPFDQSLNSDALRSSNLGLLSGFNVQRPIGSIGTIRPAQLYQMGSGQREVASLYDQGLVNPSSSMANTNTNSSGVSHHDWPQIFIGNNTNAGNRASDASLWSTISTTIGGNSERTGAGAGTVSGSSLVQNQWPDIPGYGPPP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1110g00003 307 MobiDBLite consensus disorder prediction 276 297 - -
Vium1110g00003 307 MobiDBLite consensus disorder prediction 276 307 - -
Vium1110g00003 307 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vium1110g00003 307 MobiDBLite consensus disorder prediction 94 121 - -
Vium1110g00003 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 212 IPR045174 GO:0003700|GO:0006355
Vium1110g00003 307 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vium1110g00003 307 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Vium1110g00003 307 MobiDBLite consensus disorder prediction 83 121 - -
Vium1110g00003 307 MobiDBLite consensus disorder prediction 1 40 - -
Vium1110g00003 307 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1110g00003 Vium-Chr1110 10502 12548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1110g00003 12 97 C2C2-Dof Transcription Factor Family AT5G60200 65.116 8.19e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium1110g00003 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1110g00003 - - gmx:100817065 431.024