Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11083g00005 ATGGGGTTTGGTCTGAAAAGGACGAAGAGGAGAGGAGAAGCAGAGGAAGAAGGAAGGATGCGCAAGTCTTTCAAGGATTCGCTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGAGTATTCAAGTGGAGGTGCCAGCTTCCAAATGAGATTGTCCTACAGTCCAGCTGCTCAATTCTTCCTTTTTCTTGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTAGGATTGCTCAGAATTCTAATATACAAGGCTTATGAAGATGGAAAGACAACCATATCCATTTACGAAAGAAAAGCCAGTCTAAAGGAATTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACAGAAAACAAAAACATCTATGTGCTACTAAGTATAATCTTAAAGATTTGACAAGCAAAGGAAAGTTTTCTGAAACTGACATTGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCTATCATTCAATGTGTACGGAATGCTACCAAGACTGGCATGCAAGATCTCAATCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTAAACTCTGATGATCTTTAG 639 0.4131 MGFGLKRTKRRGEAEEEGRMRKSFKDSLKALEADIQFANTLASEYSSGGASFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATKYNLKDLTSKGKFSETDIEREEECGICLEMNSMVVLPNCYHSMCTECYQDWHARSQSCPFCRDSLKRVNSDDL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11083g00005 212 FunFam RING/U-box superfamily protein 144 210 - -
Vium11083g00005 212 SUPERFAMILY RING/U-box 152 205 - -
Vium11083g00005 212 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Vium11083g00005 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 210 IPR013083 -
Vium11083g00005 212 PANTHER RING FINGER PROTEIN 41, 151 22 212 - -
Vium11083g00005 212 SMART ring_2 163 200 IPR001841 -
Vium11083g00005 212 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
Vium11083g00005 212 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11083g00005 Vium-Chr11083 19597 22943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11083g00005 107 208 C3H Transcription Factor Family AT5G01960 28.972 1.33e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11083g00005 K25840 - gmx:100814293 373.244