Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11083g00004 ATGCAAATGCAAGAGGAACACATGCAAATCATCAAGGGCAAGCGCACAAAGCGTCAGAGGCTTCCGTCCCCACTTAGGTTAACCATGTCAACATGTTCCACCGCAGACAACTCCGCAGCTTTTGAGCCTCCGACAACCTCAGATGAATTAAGGAACGAAGAGGATGAAGACTTGGCCAATTGTTTGATTCTCTTGGCTCGAGGCCATAGCACTCCAAAACCCTCACACGGCAAAGAATCCGGGCTATATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTCGGTGGCCACAGAGCCAGCCACAAGAGATTTTCCAAGGCTGGTGCAGAAGAAAAGCAAGTTACTACTTTTGGGGATAATATTAGTAAAATTAATCGTGATGATTATTGTCTCACCTTACAATTATCAACGGTTTTGTATAATAGTAGCAACAGCACTAGGAGTAGCACCGTTAATTCTAAATCTAAGGTTCACGAGTGTTCCATATGTGGGGCAGAGTTCTCGTCTGGGCAAGCCTTGGGAGGGCACATGAGAAGGCACAGAAATTTTCTGAGTTCACCTTCGATTGGGGCAATTGCATATGCTGGTGATAGAATCCCCGAAATTCCAGAAATCAAGAAACAGAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCACCACAGAGAATCCAACTTGCTTCCTTTTCAGTCCAAAGAAAAAGTCATTGTATTCTCTGCAACTTCTTTGGTGGATTGCCATTACTAA 780 0.4462 MQMQEEHMQIIKGKRTKRQRLPSPLRLTMSTCSTADNSAAFEPPTTSDELRNEEDEDLANCLILLARGHSTPKPSHGKESGLYVYECKTCNRCFPSFQALGGHRASHKRFSKAGAEEKQVTTFGDNISKINRDDYCLTLQLSTVLYNSSNSTRSSTVNSKSKVHECSICGAEFSSGQALGGHMRRHRNFLSSPSIGAIAYAGDRIPEIPEIKKQKDVLNLDLNLPAPEDDHHRESNLLPFQSKEKVIVFSATSLVDCHY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11083g00004 259 SMART c2h2final6 85 107 IPR013087 -
Vium11083g00004 259 SMART c2h2final6 164 186 IPR013087 -
Vium11083g00004 259 Gene3D Classic Zinc Finger 82 186 - -
Vium11083g00004 259 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Vium11083g00004 259 Pfam C2H2-type zinc finger 163 187 - -
Vium11083g00004 259 Pfam C2H2-type zinc finger 84 108 - -
Vium11083g00004 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Vium11083g00004 259 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Vium11083g00004 259 PANTHER ZINC FINGER PROTEIN ZAT5 20 236 - -
Vium11083g00004 259 SUPERFAMILY beta-beta-alpha zinc fingers 84 186 IPR036236 -
Vium11083g00004 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 186 IPR013087 -
Vium11083g00004 259 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11083g00004 Vium-Chr11083 8302 9333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11083g00004 6 259 C2H2 Transcription Factor Family AT2G28200 42.612 1.48e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium11083g00004 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11083g00004 - - var:108322426 508.834