Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11083g00003 ATGGGGTCAAGCAGTTTTCTATGGAACTGTACTAAAAAATTTGTCACAGCTGCTGTCATCACTGTGACTGTGTCTGATCGTTTTGCGACAGTTGTTCCTGTTCGAGGTGGCTCTATGTCTCCCACATTAAATCCTAAAACTGGTTCTCTGATGGAAGATGTTTTTGATGACTATGTTTTTGTTGAGAAATTTTGCCTTTTGGGGTACGAATTTTCAAATGGCGATGTGGTGGTCTTCCGCTCCCCAACGAATCACAAGGAGACACACATAAAAAGAATAGCTGCATTACCTGGTGAATGGTATGGCACTCATCATAACAACGATGTGATTCGGATCCCATTAGGACATTGTTGGGTTGAGGGAGACAACTCAGCCTCTAGCATTGATTCAAAGTCATTTGGACCGATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCACAAAGATTATCTTCTGTATCGGAATAA 516 0.4322 MGSSSFLWNCTKKFVTAAVITVTVSDRFATVVPVRGGSMSPTLNPKTGSLMEDVFDDYVFVEKFCLLGYEFSNGDVVVFRSPTNHKETHIKRIAALPGEWYGTHHNNDVIRIPLGHCWVEGDNSASSIDSKSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPQRLSSVSE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11083g00003 171 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium11083g00003 171 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium11083g00003 171 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium11083g00003 171 FunFam Mitochondrial inner membrane protease subunit 25 163 - -
Vium11083g00003 171 CDD S26_SPase_I 31 145 IPR019533 GO:0004252|GO:0006465
Vium11083g00003 171 Pfam Signal peptidase, peptidase S26 107 150 IPR019533 GO:0004252|GO:0006465
Vium11083g00003 171 Pfam Signal peptidase, peptidase S26 9 99 IPR019533 GO:0004252|GO:0006465
Vium11083g00003 171 SUPERFAMILY LexA/Signal peptidase 29 158 IPR036286 -
Vium11083g00003 171 Gene3D Umud Fragment, subunit A 24 163 - -
Vium11083g00003 171 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 165 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11083g00003 Vium-Chr11083 2531 4777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11083g00003 39 162 MADS-box Gene Family AT1G29960 35.385 1.47e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11083g00003 K09648 - gmx:100527429 312.768