Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11083g00002 ATGCCTCAGTTACCGTTGTGTTTTCTGAAGTTTACAAGTGATAAATGTTGCTACTTTCACTGGCTCTTCAATGTGAGCCTTTCAATTCGGCATTTTCAGAATGCCCAGTTGATGAACTTGTTCCATTTCTTCCAACCCTGTAGGGGTTCCTATTGGATCACATTTCGCAGGGTTAATAATCATAGGAACCCGCTACATGCAGAAGCAAGATGTGCACCTAAACACATGGGGTCAAGCAGTTTTCTATGGAACTGTACTAAAAAATTTGTCACAGCTGCTGTCATCACTGTGACTGTGTCTGATCGTTTTGCGACAGTTGTTCCTGTTCGAGGTGGCTCTATGTCTCCCACATTAAATCCTAAAACTGGTTCTCTGATGGAAGATGTTTTTGATGACTATGTTTTTGTTGAGAAATTTTGCCTTTTGGGGTACGAATTTTCAAATGGCGATGTGGTGGTCTTCCGCTCCCCAACGAATCACAAGGAGACACACATAAAAAGAATAGCTGCATTACCTGGTGAATGGTATGGCACTCATCATAACAACGATGTGATTCGGATCCCATTAGGACATTGTTGGGTTGAGGGAGACAACTCAGCCTCTAGCATTGATTCAAAGTCATTTGGACCGATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCACAAAGATTATCTTCTGTATCGGAATAA 741 0.4291 MPQLPLCFLKFTSDKCCYFHWLFNVSLSIRHFQNAQLMNLFHFFQPCRGSYWITFRRVNNHRNPLHAEARCAPKHMGSSSFLWNCTKKFVTAAVITVTVSDRFATVVPVRGGSMSPTLNPKTGSLMEDVFDDYVFVEKFCLLGYEFSNGDVVVFRSPTNHKETHIKRIAALPGEWYGTHHNNDVIRIPLGHCWVEGDNSASSIDSKSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPQRLSSVSE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11083g00002 246 Pfam Signal peptidase, peptidase S26 84 174 IPR019533 GO:0004252|GO:0006465
Vium11083g00002 246 Pfam Signal peptidase, peptidase S26 182 225 IPR019533 GO:0004252|GO:0006465
Vium11083g00002 246 Gene3D Umud Fragment, subunit A 99 237 - -
Vium11083g00002 246 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 76 239 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Vium11083g00002 246 SUPERFAMILY LexA/Signal peptidase 104 233 IPR036286 -
Vium11083g00002 246 PRINTS Bacterial leader peptidase 1 (S26A) family signature 164 176 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium11083g00002 246 PRINTS Bacterial leader peptidase 1 (S26A) family signature 102 118 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium11083g00002 246 PRINTS Bacterial leader peptidase 1 (S26A) family signature 187 206 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium11083g00002 246 FunFam Mitochondrial inner membrane protease subunit 100 238 - -
Vium11083g00002 246 CDD S26_SPase_I 106 220 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11083g00002 Vium-Chr11083 2531 4994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11083g00002 114 237 MADS-box Gene Family AT1G29960 35.385 9.21e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11083g00002 K09648 - gmx:100527429 312.768