Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11079g00002 ATGGAGATCTTCGAAATTTTTGGTATGAACGAATTGCAGGATAGTATGCTTTCCGAAGAGTCTATTCATGACCTTGCGTTTTTACATTCAAAAGGAATCATTCACTATAATATTAAACCATCGAATATTCTATTCGATGAATATGGATGCGCAAAGTTATGTGATTTTGGATCGGCAAAAGAGTTGAAAAATATATCAACTCATTCTTCCTCGGTACCACTTGCAACACGCGGAACACCCTGTTACATGGCTCCTGAACTTTTTGAAGATGTTGGAATCTATTCATACGCATCAGATTTATGGGCGCTAGGCTGTGCCTTATATGAGTGTTTTGCAAGAAGACCGCCCTTTATGGGAAGAGAATATAATAATATAAAATCCATTCTTTCAGATCCTATTCCACCTCTTTGTGGTCATCCCAGTCAACATTTTGTTGATTTAATCAATTCTCTGTTGGTAAAGAATCCATCAGAAAGAATACAGTGGCCTGAACTTTGTTCACATCCGTTCTGGAGAACAAAAATTCCTCCTGTGACTCTGCCTGCATTTGATTTGAATGAGAATGCCGAAGATGAAGCACCTGCTGCTCAACCTGCAGATATGGCAAACCTTGATTTTAATGAGAAT 627 0.3828 MEIFEIFGMNELQDSMLSEESIHDLAFLHSKGIIHYNIKPSNILFDEYGCAKLCDFGSAKELKNISTHSSSVPLATRGTPCYMAPELFEDVGIYSYASDLWALGCALYECFARRPPFMGREYNNIKSILSDPIPPLCGHPSQHFVDLINSLLVKNPSERIQWPELCSHPFWRTKIPPVTLPAFDLNENAEDEAPAAQPADMANLDFNEN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11079g00002 209 SUPERFAMILY Protein kinase-like (PK-like) 25 180 IPR011009 -
Vium11079g00002 209 Gene3D Transferase(Phosphotransferase) domain 1 16 183 - -
Vium11079g00002 209 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11079g00002 209 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 13 181 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vium11079g00002 209 Pfam Protein kinase domain 21 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11079g00002 209 SMART serkin_6 3 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11079g00002 Vium-Chr11079 25825 27036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11079g00002 1 176 MAP Kinase Kinase Kinase AT1G63700 30.556 3.28e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Vium11079g00002 Pkinase 2.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11079g00002 K17545 - vum:124820405 418.313