Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11076g00003 ATGGACACTGATGCTAATGCCTCTTCCCAACCCGAGTCAGAAGCATTTTCAGAGCTCAAATCATCGGAGACTCAAACATCAAAGAAAAGGAAACTGGTTGAGAAAACAGTGGTGGCAGTGAGGATAGGAGAGAATGTTGGGAAGCTGAAGAATGAAGGACTACCTTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCGGCCAAAAAGCAGGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATCACATACACCTCTACACATAACCATCCATGCCCCACCACCACAAATTCACCCCAACAACCAAAAGAATACGAATCCGAAACGACCCAAGAACTCTCAAAGGAGGAAGATCAAGAACATACAGAAGAAGAGCAAAGGGATGATAAGCCGATCGATGAAGGTAGAAATGAAGAAAAGTTTCTTTACCTGCAATCTCCAATACGATGCTCCCAAGACATAATAATAGAACAAGAAGACCCTTTCAAGCTGAACACGGAGAAAAACCATGAAAGAATAGATCTCCTCTTGGAGGAGGAAGAGCCCCTTTGTTACGCACAAGCGAAGAACATGTCTGGTTCGAAAAGTGAAGAACTTGATTTTTTCGACGAGCTTGAGGAGTTGCCCATGTCTTCATCTTTCTTGCACTTCACGAGGAGCATTTTTTCCGATGAAAGGATTCCCGTTGCCCCTTCTTGA 768 0.4362 MDTDANASSQPESEAFSELKSSETQTSKKRKLVEKTVVAVRIGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPCPTTTNSPQQPKEYESETTQELSKEEDQEHTEEEQRDDKPIDEGRNEEKFLYLQSPIRCSQDIIIEQEDPFKLNTEKNHERIDLLLEEEEPLCYAQAKNMSGSKSEELDFFDELEELPMSSSFLHFTRSIFSDERIPVAPS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11076g00003 255 Gene3D WRKY domain 42 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium11076g00003 255 MobiDBLite consensus disorder prediction 109 130 - -
Vium11076g00003 255 MobiDBLite consensus disorder prediction 1 22 - -
Vium11076g00003 255 MobiDBLite consensus disorder prediction 131 160 - -
Vium11076g00003 255 ProSiteProfiles WRKY domain profile. 50 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11076g00003 255 MobiDBLite consensus disorder prediction 109 160 - -
Vium11076g00003 255 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 236 IPR044810 GO:0003700
Vium11076g00003 255 FunFam WRKY transcription factor 65 37 116 - -
Vium11076g00003 255 SMART WRKY_cls 55 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11076g00003 255 Pfam WRKY DNA -binding domain 57 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11076g00003 255 MobiDBLite consensus disorder prediction 1 30 - -
Vium11076g00003 255 SUPERFAMILY WRKY DNA-binding domain 53 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11076g00003 Vium-Chr11076 9174 10912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11076g00003 22 237 WRKY Transcription Factor Family AT4G01250 39.815 1.71e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium11076g00003 WRKY 4.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11076g00003 - - var:108328057 457.988