Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11076g00001 ATGGAAAATGATAAATTTTCATCCACAGCTTTAAATTTAAGAAAAATACTAGTGGGTTATGGCTCTACACAAGAGGATATGTTTCAAGAGAAAGAGAGTTTTTCTGGAATGGAATTGCTGGGACCTATTGAGGATGAAAAAGGAACCAAACTGTTCGAGGATGAAGATCAGAAACAAGTCGATAAGTTGTTAGAAGTGTTTAACTGTGACTATGATATGCAACTGAAACCGACACCACAGTTCGATGAAACTACGCGGCCAGCGAAGCATGACATAGAATCAGCTGAACACAATAATCATGTGTCACCATCATTAGCATCCTTAGAGCTGCTGAGAAACTACATAAGCAGATTTAAGAGGATAAGCGAGCAAAATATAGCGAAACCTTCTTTGGATCACCACCAGATATCAACTGAAGAAATTATAAGAGTAGCTGGAGCAAGATATGTTCAGTATTCTGCACATTGGAATGATAGTTTTTGCATCCCTATGCACCCATACGGATTGGATTTTGGATGTTTGTCTGAGGAGGAAAATAGAGACGTAGAACTTGCTCAGTTTCTCCTTGCTGCAGCTGAGAGGGTAGGTTGCCACCAGTTTGAACGTGCAAGCAGATTACTTCTCCACTGTCAACTGAATTCATCACCCAATAATGGAAGCCCCGTTCAAAGAGTTATCTTTCACTTCGCCCAAGCACTTCGAGAGAGAATCGACAGAGGACTGGGAAGAACGACAGCGAAGGGATCGGAGAAAAAAGAAGAAAGGGGGTGGATTCAAAAGATTGACACCAATGTTGCCCTAACATTCCATCAAAATATTCCTTTCAATCAAGTCATGCAATTCACTGGAATACAAACTATAGTGGAACATGTTGCATCTGAGACCAAAATTCATGTTATTGATTTCGAAACAAAATGTGGGGTGCACAATACAATATTGATGCAAGCACTGACAGAACGCCAGGATTGCAAAGTGCAACTTTTGAAGATAACTGCACTTGCACTTAATTCATGCAGAAGCATGATACAAGAGACTGGAAAAAGGTTAGCTAGTTTTGCAGAATCATTGAAGTTACCCTTTTCATATAATGCAGTTTTTGTGACAGACTTTGCAGAGATAAGGGAAGGTGATTTTGAAATTGGAGAGGGTGAAGCAGTGGCTGTGTACTCTCCATATTTTCTGAGGCGCATGGTATCAAGGCCAGATTGTATGGAAAACTTGATGAGGGTTATATGGAATATGAAGCCGGTTATAATGATAGTTCTTGAAGTTGAAGCAAACCATAACTCACCCATCTTTGTGAACCGGTTCATTGAAGCATTGTTCTTCTACTCGGCTTATTTTGATTGCCTTGGAAGCTGCATAAATGATGAGAATGAGAGCAGAAGGAAAATAGAAACAGTTTTATCTGAGGGGATAAGGGAAATTGTTGCAATGGAAGGGAGAGAAAGAAAAGTTAGAAATGTGAAGATAGATGTTTGGAGAAAGTTCTTTGCAAGGTATCGAATGGTAGAAACAGGGTTTAGTGAGTCATCTCTTTACCAAGCTCACCTGGTGAACAAAGA 1565 0.3987 MENDKFSSTALNLRKILVGYGSTQEDMFQEKESFSGMELLGPIEDEKGTKLFEDEDQKQVDKLLEVFNCDYDMQLKPTPQFDETTRPAKHDIESAEHNNHVSPSLASLELLRNYISRFKRISEQNIAKPSLDHHQISTEEIIRVAGARYVQYSAHWNDSFCIPMHPYGLDFGCLSEEENRDVELAQFLLAAAERVGCHQFERASRLLLHCQLNSSPNNGSPVQRVIFHFAQALRERIDRGLGRTTAKGSEKKEERGWIQKIDTNVALTFHQNIPFNQVMQFTGIQTIVEHVASETKIHVIDFETKCGVHNTILMQALTERQDCKVQLLKITALALNSCRSMIQETGKRLASFAESLKLPFSYNAVFVTDFAEIREGDFEIGEGEAVAVYSPYFLRRMVSRPDCMENLMRVIWNMKPVIMIVLEVEANHNSPIFVNRFIEALFFYSAYFDCLGSCINDENESRRKIETVLSEGIREIVAMEGRERKVRNVKIDVWRKFFARYRMVETGFSESSLYQAHLVNK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11076g00001 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 130 518 IPR005202 -
Vium11076g00001 521 Pfam GRAS domain family 185 518 IPR005202 -
Vium11076g00001 521 ProSiteProfiles GRAS family profile. 175 521 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11076g00001 Vium-Chr11076 12 1667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11076g00001 178 513 GRAS Transcription Factor Family AT5G17490 30.861 2.12e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium11076g00001 GRAS 7.5e-70 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11076g00001 - - vum:124820400 1046.19