Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1105g00002 ATGGAAAGCACTGTCACGTATGAGACTGATCTCAACCTCAAGGCAACTGAGCTTAGATTGGGGCTCCCAGGAACAGAAGAAACTCAGGAAAAAACACTGCCTCCGTCTGCTAGAACTACCAACAAAAGGCCATTGACTGAAACTTCTGAGGAGACTGTTTCTAATGCTCAAAAAAATGTGGAAGCTGAGGCAGCCCCTCCAGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTTCACGAGAACGAGGGTGCTGGGATTTATGTGAAAGTAAGCATGGATGGAGCTCCTTACCTGAGGAAGATTGACCTGAAGGTGTATGGAGGCTACACACAACTTCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAATGAAGGTTACAAGGGATCTGACTATGCACCAACTTATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTGAGGATCATGAAAGGATCAGAGGCTCGGGGTTTGGGTTGTGGTGTATGA 573 0.4625 MESTVTYETDLNLKATELRLGLPGTEETQEKTLPPSARTTNKRPLTETSEETVSNAQKNVEAEAAPPAKAKIVGWPPIRSYRKNSLHENEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKALENMFKLTIGEYSENEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1105g00002 190 ProSiteProfiles PB1 domain profile. 93 180 IPR000270 GO:0005515
Vium1105g00002 190 MobiDBLite consensus disorder prediction 16 65 - -
Vium1105g00002 190 FunFam Auxin-responsive protein 88 190 - -
Vium1105g00002 190 SUPERFAMILY CAD & PB1 domains 83 179 - -
Vium1105g00002 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 184 IPR003311 GO:0005634|GO:0006355
Vium1105g00002 190 MobiDBLite consensus disorder prediction 29 59 - -
Vium1105g00002 190 Pfam AUX/IAA family 49 187 IPR033389 -
Vium1105g00002 190 Gene3D - 87 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1105g00002 Vium-Chr1105 60082 61508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1105g00002 97 189 B3 DNA Binding Superfamily AT4G23980 33.333 1.06e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium1105g00002 AUX_IAA 1.7e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1105g00002 K14484 - gmx:100527777 327.791