Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1105g00001 ATGGCAACTATGCTGGCAAAGGACCATGCTCTCAACCTCAAGGAGACTGAGCTTTGCCTCGGTCTGCCTGGTGCTGGCGGTGGAGGCGGCGGCGGTGGCGGTGGCTCTGAGGTGGAAACACCAAGGGCTACTGGGAAGAGAGGGTTCTCTGAGACAGTTGATCTGAAGCTCAATCTGCAGGCCAAGGAAGATCTCAACGACAATCTGAAGAATGCCTCAGAGGAGAAGACCCTCCTTAAGGATCCTACCAAACAACCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACATGATGAGCCAGAAGGTTAGCACCGAGGATGGAGCTGAGAAGACAACAAGCAGCACTGCTTCTGGGGCATTTGTCAAAGTTTCCATGGACGGAGCTCCTTATCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAATTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGCGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAGGCAATTGGACTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 732 0.4986 MATMLAKDHALNLKETELCLGLPGAGGGGGGGGGGSEVETPRATGKRGFSETVDLKLNLQAKEDLNDNLKNASEEKTLLKDPTKQPAKAQVVGWPPVRSYRKNMMSQKVSTEDGAEKTTSSTASGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNERKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1105g00001 243 Pfam AUX/IAA family 43 234 IPR033389 -
Vium1105g00001 243 FunFam Auxin-responsive protein 120 235 - -
Vium1105g00001 243 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Vium1105g00001 243 Coils Coil 55 75 - -
Vium1105g00001 243 SUPERFAMILY CAD & PB1 domains 122 224 - -
Vium1105g00001 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 230 IPR003311 GO:0005634|GO:0006355
Vium1105g00001 243 MobiDBLite consensus disorder prediction 25 47 - -
Vium1105g00001 243 Gene3D - 119 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1105g00001 Vium-Chr1105 17897 20167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1105g00001 110 233 B3 DNA Binding Superfamily AT4G23980 33.065 2.95e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium1105g00001 AUX_IAA 1e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1105g00001 K14484 - gmx:100810762 410.994