Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium11057g00001 | ATGCAGGTGACAATGTTTTCATCACTTCTAATTCTTTGTCTAACTTTTCTTGTGTTTTTGCTGTTCTTCTTCAAAACTTTAAAAAATCCACAACTTCCACCTGGTCCTAAAGGTCTTCCCATAGTGGGAAATATTCACCAACTAGATAGTTCTTCTCTTCATATGCAGCTAAGGGAACTGTCAAAGAAATATGGTCCTTTATTTTCCCTTCGATTAGGTTTAAAGCAAGGAATAGTTGTTTCCTCACCAAAACTAGCCACACTGGTAATGAAAGATCACGACCGTGAATGTTGTGCACGACCAAAATTACTTGGCCAACAGAAACTGTCTTATAATGGGTTAGACTTAGCATTTTGCCCATATACTGAGTATTGGAGAGAAATCAGAAAACTTTGTGTTGTCCATGTCCTTAGCTCCAAACGTGTCTCATGCTTTTCCTCATTAAGACATTTTGAGGTGAAAGAGATGATAAAGAAAATTTCCATGCATGCTTCAAATTCACAAGTTACCAATCTGAGTGAAGTGATAGTGTCTCTTACCAGCACTATTATCTCTCGAATTGCTCTGGGGAGAAGGTATGAAGAAGAAGGAACCGAAAGGAACAAGTTCGATAGGTTGCTGAGTGAGTGTGAAACCATGATGAGTTCCTTCTTTGTTTCAGATTATATTCCTTTCATGGGTTGGGTTGATAAACTCAGGGGAATTCATACACGTCTTGAACGGACATTCAAAGAGATGGATAACTTCTACCAAGAAGTCATTGATGAACACGTTGCAGATTCTCATAAAAAGACTCCACAGGAAGAGGACATCGTTGATGTCTTGCTTCAACAGAAGCAGCACCATTCGTTTTCCATAGATCTCACTAATGATAACATCAAAGCTGTGATCATGAACATCATCATTGGCTCAACAAGTACCACTACAGCCACAGCAGTTGGGGCAATGACTGAGTTAGTAAAAAATTCAAGAATCATGAAGAAAGTTCAAGAAGAAATAAGAAGTTTAAGTGGTGAGAAAGACTTTTTAGATGAAGATGATGTTCAAAAGTTTCCCTATTTTAAAGCAGTGATAAAAGAAACGCTAAGGTTGTACCCACCAGCACCATTGCTTGTACCAAGAGAAACAAGGGAAAACGTTACAATAGATGGTTATGAAATTCCAGCGAAGACAATGATATATGTGAATGCTTGGGCTATTCATAGAGACCCTGAGGCTTGGGAAGATGCAGAAAAGTTTATACCAGAGAGGTTTTTAGACAGCACTGTAGATCTTCGTGGACAAGATTTTTGTTTCATTCCATTTGGTGCTGGTCGTAAGATGTGCCCAGGTTTGCATATGGCTTTCGCTGTGTTGGATGTTATACTTGCTAACCTTCTTTACTCCTTTGACTGGGAATTGGTAGAAGGAACTGAAACAAACGACACAGGTTCTACAGTTTTGCCAGGACTTACGAATCATAAGAAGAATCCTCTTTGTGTTTTGGCTAAGTGTCGTATCTAA | 1503 | 0.3886 | MQVTMFSSLLILCLTFLVFLLFFFKTLKNPQLPPGPKGLPIVGNIHQLDSSSLHMQLRELSKKYGPLFSLRLGLKQGIVVSSPKLATLVMKDHDRECCARPKLLGQQKLSYNGLDLAFCPYTEYWREIRKLCVVHVLSSKRVSCFSSLRHFEVKEMIKKISMHASNSQVTNLSEVIVSLTSTIISRIALGRRYEEEGTERNKFDRLLSECETMMSSFFVSDYIPFMGWVDKLRGIHTRLERTFKEMDNFYQEVIDEHVADSHKKTPQEEDIVDVLLQQKQHHSFSIDLTNDNIKAVIMNIIIGSTSTTTATAVGAMTELVKNSRIMKKVQEEIRSLSGEKDFLDEDDVQKFPYFKAVIKETLRLYPPAPLLVPRETRENVTIDGYEIPAKTMIYVNAWAIHRDPEAWEDAEKFIPERFLDSTVDLRGQDFCFIPFGAGRKMCPGLHMAFAVLDVILANLLYSFDWELVEGTETNDTGSTVLPGLTNHKKNPLCVLAKCRI | 500 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium11057g00001 | 500 | FunFam | Cytochrome P450 83B1 | 21 | 495 | - | - | |
| Vium11057g00001 | 500 | Pfam | Cytochrome P450 | 33 | 489 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | Coils | Coil | 326 | 346 | - | - | |
| Vium11057g00001 | 500 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 435 | 444 | IPR017972 | GO:0005506|GO:0016705 | |
| Vium11057g00001 | 500 | Gene3D | Cytochrome P450 | 26 | 499 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | SUPERFAMILY | Cytochrome P450 | 33 | 499 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | CDD | CYP71-like | 63 | 492 | - | - | |
| Vium11057g00001 | 500 | PRINTS | P450 superfamily signature | 303 | 320 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | P450 superfamily signature | 356 | 367 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | P450 superfamily signature | 433 | 442 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PANTHER | CYTOCHROME P450 71B11-RELATED | 18 | 497 | - | - | |
| Vium11057g00001 | 500 | PRINTS | E-class P450 group I signature | 355 | 373 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | E-class P450 group I signature | 442 | 465 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | E-class P450 group I signature | 396 | 420 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | E-class P450 group I signature | 432 | 442 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | E-class P450 group I signature | 292 | 309 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | E-class P450 group I signature | 179 | 197 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vium11057g00001 | 500 | PRINTS | E-class P450 group I signature | 312 | 338 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium11057g00001 | Vium-Chr11057 | 2508 | 4496 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium11057g00001 | 9 | 499 | Cytochrome P450 | AT4G31500 | 43.662 | 5.51e-152 | 441 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium11057g00001 | - | - | gmx:100796528 | 709.909 |