Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1104g00001 ATGGACAACCTTGGCGGTTCTACTATTCGTATGAAAGCAATTGAGGAGCTTCTCAGAGGTCGTGATTCTGCCACACAGCTCAGGAGTGTAATCAATGGGAATGGTGAAGATTCTCCTTCAGCGGAGAAACTCGTGAAGGAGGTGCTCATGTCCTTAACCAACTCCCTCTTGCTCTTGAACGACAACCCCACTTCTGAATTTCACGATGCCTCCAATGTTCAACTTTGGGCCTCTCCCAAACTCGAGGACTCTCAAGAGAGCAATTGCAAGAACTCCAGGGTTAAAGCTCGAAGAGGGTGTTACAAGAGAAGAAGAACTGAACAAACAAGAGAGAAGGAGTCTGAAGCTCCAATCGATGATGGCCACCAATGGAGGAAGTATGGTCAAAAGGAGATTCTCAATGCCAAATTCCCAAGGAACTACTTTAGGTGCACTCACAGAGACCAGGGTTGCCAAGCGACAAAGCAGGTGCAAAGAGTTCAGGAGGATCCAATCTTGTACAAGACAATCTACTACGGTGAGCACAGTTGCAAGAACATGGGAAACCCCGAGATCATACTCGACATGTCTCCTTCATCTTCTTCCAAGTTTCTTAGCTTCAACAACTCCTTCTCTACCCAATCACAACAAGAGTGTCCCTTTCTCTCATCTTCTTTCCCTTCATCTGTCAAAAGGGAGTGCAAGGAGGAGATTCCACCCTCAACTTCCTCCAATGATTACCTCATCTCTTCAGACCTCACCTTTGATGGTTCACCAAGACATGTCGCTCTATCATCTTCAACACCTGACTCAGAGTACAAGGCTGTCGACTTTCCAGATCTCTTTGATGATGTCTTTGAAGACTTGCTTGAATTTAGATAG 861 0.4588 MDNLGGSTIRMKAIEELLRGRDSATQLRSVINGNGEDSPSAEKLVKEVLMSLTNSLLLLNDNPTSEFHDASNVQLWASPKLEDSQESNCKNSRVKARRGCYKRRRTEQTREKESEAPIDDGHQWRKYGQKEILNAKFPRNYFRCTHRDQGCQATKQVQRVQEDPILYKTIYYGEHSCKNMGNPEIILDMSPSSSSKFLSFNNSFSTQSQQECPFLSSSFPSSVKRECKEEIPPSTSSNDYLISSDLTFDGSPRHVALSSSTPDSEYKAVDFPDLFDDVFEDLLEFR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1104g00001 286 Gene3D WRKY domain 88 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1104g00001 286 SMART WRKY_cls 118 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1104g00001 286 Pfam WRKY DNA -binding domain 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1104g00001 286 SUPERFAMILY WRKY DNA-binding domain 116 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1104g00001 286 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 202 IPR044810 GO:0003700
Vium1104g00001 286 ProSiteProfiles WRKY domain profile. 113 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1104g00001 Vium-Chr1104 806 2528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1104g00001 10 177 WRKY Transcription Factor Family AT3G56400 39.205 3.29e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1104g00001 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1104g00001 - - gmx:100805895 383.259