Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11045g00002 ATGGTCAAGGAAGAGAAAGAGAACTCTTTCAACAGTGTTGAACTTCATCTTGGGGTTGATGCTTCTCATTCTGCGCCACCAGAAATAAACCATGTGATCACTGAAGCTCAGAGGCGTGAGCTTCACCACCAGGTTTTCATCTTCAACCACTTAGCTTATAAACTTCCTCCTCCTCATCACCGTGTCCAATTCCCAAGCAACATGTCAGAATACAGTTTCCTTGGTTTTGATCAAGGGAGTAGGATGGTTCCAGAACCTCATAGGTGTAGAAGAACAGATGGAAAGAAATGGAGATGCAGTAAGAGTGTAGTGCCTGGTCAAAAGTACTGTGAAAGGCACATGCATAGAGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACACTCCTTTGGCACCAAAACCTTGTAGCAAGTCACCTACCAAATCAGCTTCAGAGACACTATTTGAAATTTCAAATCCAAACCTTATCATGGCCATGCAACCTAGTGACACACCTTCCAGTACTCCATCAAGGAGCCTCAGCATTGACAATTGCTCTTCTATGAACAGGTCCTTCATGGTGTTTTCTTCCACCTTTGCGGCATCCCCTGGCTCCGGCCTTGCCTCTGCCAGTGCTCCTAAGGCGGCAGTAACACTCGGCAGTGTGGCATCTGTTGCTTCGGATGACAAAAGTTGCCTAAAGATGTGCAAGAAAGATAACCAGTCCAAGAGTTGTGTCAGTAACAACACAGGCAATAGAAGTGATGGGAAAGGAAGCATTGTTGGTGATTCTAATAACATCTCTACTGGAATAAGCTTCTCCCCAACAAGTGTTCTTCAAGTTTTTGGTAACAACCCATCTCACCTGATTGACAAAACCAACATAGAATCTGCACCAGACAGGTGTCGGAGAACGGACGGCAAGAAGTGGCAATGCAAGAGTGCTGTTCTTCCTGGTCAGAAGTACTGTGCCACACACATGCACAGAGGTGCTAAAAAGCGTTTTGCAAACCATGAAATAGCAGCAGCAGCTAAAACCACCACAACTACTTGTTCTGCCGTTACCATTGCACGGTTGCCGAACTCTCAAGCCACAACCGACGTGCAGAAAGAGGGTTCTGCAATTCCAAGTACAAATCTTTCCATGTCAGTTCCAGCAAGTGCTCCTTTCATACAATGCAATGGGAAAGGCTCCAGTAACAGTGACACTGATACCACCATTAGTGACACCTTGCAAGAGTGTAGCTATACTTCTTTCTGA 1251 0.454 MVKEEKENSFNSVELHLGVDASHSAPPEINHVITEAQRRELHHQVFIFNHLAYKLPPPHHRVQFPSNMSEYSFLGFDQGSRMVPEPHRCRRTDGKKWRCSKSVVPGQKYCERHMHRGRNRSRKPVETSQVNTPLAPKPCSKSPTKSASETLFEISNPNLIMAMQPSDTPSSTPSRSLSIDNCSSMNRSFMVFSSTFAASPGSGLASASAPKAAVTLGSVASVASDDKSCLKMCKKDNQSKSCVSNNTGNRSDGKGSIVGDSNNISTGISFSPTSVLQVFGNNPSHLIDKTNIESAPDRCRRTDGKKWQCKSAVLPGQKYCATHMHRGAKKRFANHEIAAAAKTTTTTCSAVTIARLPNSQATTDVQKEGSAIPSTNLSMSVPASAPFIQCNGKGSSNSDTDTTISDTLQECSYTSF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11045g00002 416 ProSiteProfiles WRC domain profile. 83 127 IPR014977 -
Vium11045g00002 416 MobiDBLite consensus disorder prediction 117 145 - -
Vium11045g00002 416 ProSiteProfiles QLQ domain profile. 32 67 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium11045g00002 416 MobiDBLite consensus disorder prediction 238 258 - -
Vium11045g00002 416 MobiDBLite consensus disorder prediction 124 145 - -
Vium11045g00002 416 PANTHER GROWTH-REGULATING FACTOR 5 279 387 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium11045g00002 416 Pfam WRC 84 126 IPR014977 -
Vium11045g00002 416 Pfam WRC 296 331 IPR014977 -
Vium11045g00002 416 ProSiteProfiles WRC domain profile. 293 338 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11045g00002 Vium-Chr11045 8376 13198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11045g00002 36 331 GRF Transcription Factor Family AT2G45480 32.219 1.19e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11045g00002 - - pvu:PHAVU_010G048400g 659.833