Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium11041g00001 | ATGTCAAAAGGAGAAATCGAGGAGCCAAATATCAAAAAGCGAAGGAAAATTATGAAAAGTTCATTATGTTCATGTTCATCATCATCTCCACCGTCATCATCATCTTTACCTCCACCACCATCACCATCTTTACCTCCACCACCATCACCATCTTTAGCTTTACTTGTATCACCACCACCATCTTCACCTTTAACTATACCACCACAACCATTTTCACCTCCACCTCTAGCATCACCACCATCCTTACCTCTACCACCGCCGTCAAGGATTAAAGTGGTAGGGCCAAAATCTCCACCACCACGAAAGGTAGTTGTGACATGTCCAACACCTTCATCATCAGATTTGTCAGTAGAATTTAGGAATCGAGTCACCGAGTTGAATGGCTATGATCTTAAATTTGTGATGCACAAGATACTTTTCTCATCGGATGTAAAGCCAAACAATAACCGATTATCAATTCCAAAAAAGAAAATCAAATGTGATTTTCTCACTGAAAATGAGATTATGAAGTTGGAAGAAAAAGAAAATAATGATAAAATTATTGGTTTGGAAGTGACTGTGTTGGACCCCTGTTTGAGAGAATATACTTTGCCAATGAAGAAGTGGACTATGAAATCAGACACCTACAACCTTGTAAAGGAGTGGAACAAGATTGTGGCAGCTAACAAGTTTAAAGAAGACCAAGAATTACAAATATG | 698 | 0.3854 | MSKGEIEEPNIKKRRKIMKSSLCSCSSSSPPSSSSLPPPPSPSLPPPPSPSLALLVSPPPSSPLTIPPQPFSPPPLASPPSLPLPPPSRIKVVGPKSPPPRKVVVTCPTPSSSDLSVEFRNRVTELNGYDLKFVMHKILFSSDVKPNNNRLSIPKKKIKCDFLTENEIMKLEEKENNDKIIGLEVTVLDPCLREYTLPMKKWTMKSDTYNLVKEWNKIVAANKFKEDQELQI | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium11041g00001 | 232 | Gene3D | - | 125 | 232 | IPR015300 | - | |
| Vium11041g00001 | 232 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Vium11041g00001 | 232 | MobiDBLite | consensus disorder prediction | 1 | 102 | - | - | |
| Vium11041g00001 | 232 | Coils | Coil | 225 | 232 | - | - | |
| Vium11041g00001 | 232 | SUPERFAMILY | DNA-binding pseudobarrel domain | 135 | 228 | IPR015300 | - | |
| Vium11041g00001 | 232 | PANTHER | B3 DOMAIN PLANT PROTEIN-RELATED | 101 | 232 | IPR005508 | GO:0003677 | |
| Vium11041g00001 | 232 | MobiDBLite | consensus disorder prediction | 32 | 94 | - | - | |
| Vium11041g00001 | 232 | Pfam | B3 domain-containing protein At2g31720-like | 123 | 220 | IPR005508 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium11041g00001 | Vium-Chr11041 | 1523 | 3613 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium11041g00001 | 104 | 230 | B3 DNA Binding Superfamily | AT1G05930 | 27.907 | 9.17e-11 | 58.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium11041g00001 | - | - | vum:124820374 | 311.997 |