Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11039g00001 ATGACGACTGGTATAGTACGAGACCAGAACCTGGAGAAACACATTCACAAGCAGATGGGGTGCATGGCTGGCTTTCTTCAGATCTTTGACCGTCATCAGATACTCACTGGAAAACGCATCTATTCCCCCAAACGTCTACCTCCGGCCTCACCGGAACCTGACAAAGTTACTGCCTCGCCGGCTCGTTCCACGCAGTCGCCGGCTAGGGAGGTGGTCCAATCCGAACCCAAGGCGAGTTCTCCTGTGCTCCCTGTTCTGGAATTCAAGGAAGGCACGCGTTCCTCTTGGAAGTTCTCGCGAGAGGCTCCGAGACTGTCTCTTGACAGCAGAGCCATGGTGGACGCAAAAGGAACTCTTCACCTTCACGCGCGAGAGATCCCCTCGGAGAACGATGGAGACAAGCAGCGTCGTTCCACCAGCGTCATTGCCAAGCTTATGGGCCTGGAGCCCCTGCCCGATTCAGAGCCCGGACCAGGGCCCATAGCAAAGCTGCAGAGATCCGCTTCGGAGTCCAGAGTGTCCAGAGATCTGTCTCTGCCTCTGCCACTGCCACAGTGTCGTTTTCTGGACACAAACAATTTCCCAAGCGCGGTTCAGGTCACCAATGTGGTCCTTGAGAATAATAATGCTGCCATCGATGCCCGATTGAGCAATGGCAGAGCTGCAGATCCACCCAGGCAGAGGGCCAAGAAGAGTTTCTATGACTCGGCGGATTTCTTCCCCGAGCCCAAACACACCGCTTCGGTGTACGGGGAGATTGAGAGGAGGTTGCGGATGCGAGGGATTAACGAGCCATCCAAGGATCTCCACACTCTCAAACACATCCTGGAGGCCTTGCAGCTCAAGGGGCTTTTGCATTCCAACGGCAAATCCAATCAATCTCCCATTGTCGTTATGAAACCTGTCCGATCGGTGAACCGGACCGGTAGCGATTCTCCTCCTCCTGCCCCTCTCCTCCGGTCCAGTCCTCGCCGGAACCTCCGTGTTGGGAACGAGAACAGGAGGATTGACCAAAACGAACGAGGTTCAATGAGTCAAAGCAACAGAGCACTAAGTTCGAGTCCAAACAGGAGAAAGCAACGAATAGTGGAACCTCAGAGGAANAATAATGCTGCCATCGATGCCCGATTGAGCAATGGCAGAGCTGCAGATCCACCCAGGCAGAGGGCCAAGAAGAGTTTCTATGACTCGGCGGATTTCTTCCCCGAGCCCAAACACACCGCTTCGGTGTACGGGGAGATTGAGAGGAGGTTGCGGATGCGAGGGATTAACGAGCCATCCAAGGATCTCCACACTCTCAAACACATCCTGGAGGCCTTGCAGCTCAAGGGGCTTTTGCATTCCAACGGCAAATCCAATCAATCTCCCATTGTCGTTATGAAACCTGTCCGATCGGTGAACCGGACCGGTAGCGATTCTCCTCCTCCTGCCCCTCTCCTCCGGTCCAGTCCTCGCCGGAACCTCCGTGTTGGGAACGAGAACAGGAGGATTGACCAAAACGAACGAGGTTCAATGAGTCAAAGCAACAGAGCACTAAGTTCGAGTCCAAACAGGAGAAAGCAACGAATAGTGGAACCTCAGAGGAAAGTGTGTGTTGATTCAAGAAGGGGGTCTGTGTCTGTCTCTCCGGTTCATTCTCCCAAGACGAGCCCAATAAGGAATGCAGGCAATCAGCAGGTGTCATGTGGATCGCCTAGGATGAGAAGAAATGTGGAGCCTAAGTTGAAAATGCTGGGTGGGGCAGAGGATGAATCGTCCACAGTCTCAGAGAACAGCTTCAGCACCTCTTCATATCCCGATACAGAGAGGTACAGGTTGGAAGAGTACAAAGAAGGGAAAGATCTGCTGGATAGGTGTGATAAGCTGCTGAACAGCATAGCAGAAATAACAGCAGCCAACGAGTTGCAACCGAGTCCAGTATCGGTTCTGGACTCGTCGTTTGACAAGGACGACTGGTGTTCACCATCCCCTATAACCAAACGCTGCATTGATTACAAAGATCAAGCGGCGGAGTCAGAAGATGATATGTGGAGTGCGGCACTGTGCAGTAGCGAGGAGGCAGCGTCGGAGGATTGCGATTTCGTGTACGTATCGGAGATTCTTCGAGCGTGCAGTTACTTGCCGGAAGAGAGCGACATTTTTCTGTTACTGGAGAAGCAGCAATGCCTGAAAGGAAAGGATACCTCAAAGGCTTCGACGCTGCAGAGGCGGTTGATCTTCGACACTCTCCAGGAGATCCTGCAGCGGAACCAACAGTTGCCGCCGTGGAAGGCGGTGTCGTACGGCGAGCAGAGGCAGAAGATCTGGTCGGAGTTTCGGAGGATCCGAGAGAGGGAAGAATCGGAATCGGAGGACTTGTTCAAGGTTATATGCGGAGTGTTGAAGAAGGACATGGCGGAGGAAATGCGGGGGTGGGGAGAATGGGCGGTGGAGATGGGAGATGTGGTGTTAGACATTGAACGTCTGGTGTTTAAAGATCTGGTTGGCGAAACCATTAGAGAACTCGCTTCGTTTTCTCCTCATTGTAACAACGACAAGCTACCCGCGCTTCGTAGGAAACTCCTCTTTTGA 2571 0.5309 MTTGIVRDQNLEKHIHKQMGCMAGFLQIFDRHQILTGKRIYSPKRLPPASPEPDKVTASPARSTQSPAREVVQSEPKASSPVLPVLEFKEGTRSSWKFSREAPRLSLDSRAMVDAKGTLHLHAREIPSENDGDKQRRSTSVIAKLMGLEPLPDSEPGPGPIAKLQRSASESRVSRDLSLPLPLPQCRFLDTNNFPSAVQVTNVVLENNNAAIDARLSNGRAADPPRQRAKKSFYDSADFFPEPKHTASVYGEIERRLRMRGINEPSKDLHTLKHILEALQLKGLLHSNGKSNQSPIVVMKPVRSVNRTGSDSPPPAPLLRSSPRRNLRVGNENRRIDQNERGSMSQSNRALSSSPNRRKQRIVEPQRXNNAAIDARLSNGRAADPPRQRAKKSFYDSADFFPEPKHTASVYGEIERRLRMRGINEPSKDLHTLKHILEALQLKGLLHSNGKSNQSPIVVMKPVRSVNRTGSDSPPPAPLLRSSPRRNLRVGNENRRIDQNERGSMSQSNRALSSSPNRRKQRIVEPQRKVCVDSRRGSVSVSPVHSPKTSPIRNAGNQQVSCGSPRMRRNVEPKLKMLGGAEDESSTVSENSFSTSSYPDTERYRLEEYKEGKDLLDRCDKLLNSIAEITAANELQPSPVSVLDSSFDKDDWCSPSPITKRCIDYKDQAAESEDDMWSAALCSSEEAASEDCDFVYVSEILRACSYLPEESDIFLLLEKQQCLKGKDTSKASTLQRRLIFDTLQEILQRNQQLPPWKAVSYGEQRQKIWSEFRRIREREESESEDLFKVICGVLKKDMAEEMRGWGEWAVEMGDVVLDIERLVFKDLVGETIRELASFSPHCNNDKLPALRRKLLF 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11039g00001 856 PANTHER LONGIFOLIA PROTEIN 3 61 IPR033334 GO:0051513
Vium11039g00001 856 MobiDBLite consensus disorder prediction 57 73 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 580 599 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 340 359 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 40 77 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 286 394 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 539 565 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 584 599 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 447 472 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 286 311 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 501 520 - -
Vium11039g00001 856 Pfam Domain of unknown function (DUF4378) 693 830 IPR025486 -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 146 169 - -
Vium11039g00001 856 MobiDBLite consensus disorder prediction 447 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11039g00001 Vium-Chr11039 8793 12671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11039g00001 582 856 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 47.500 7.90e-69 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11039g00001 - - vum:124820367 1654.8