Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11035g00002 ATGTCAGAAAGGATGTATCCTAGGTTGTTGGTTTTGGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAGAAAGATGGTTACTTGAGCTACTCACCACCCCTTCTGTCTTCCTCTTCTTCTTCACCACCTCCTTACCCTCCTGGTGCTGCTTTCCACAAAGAATCACCACCTTCAACGGCAACAACAGCATCATCTGGCACTAGAATTAGTCCTGCTGTTCTCTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCATCCTCCACCTGCTTGTTAGATTTCTCATAAAGTACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACCCGGAAATCTCCACATCCGATGCTCTCCAGCGGCAGCTGCAGCAGCTCTTCCATCTCCACGACTCTGGCTTGGATCAAGCCTTCATTGATGCTCTTCCTGTGTTTCAGTACAAGGAGATTGTTGGGTTGAAAGAGCCCTTTGACTGTGCTGTTTGTTTGTGTGAGTTTTCTGAGAAGGATAAGCTGAGGTTGTTGCCTATGTGCAGCCATGCTTTTCACATCAGTTGTATAGACACATGGCTTCTGTCAAACTCCACATGCCCTCTTTGCAGAGGAACGCTTCTCACTCAGGGATTTTCTATTGAGAACCCTATATTTGATTTTGATGATCTGAGGGAGGACGAAGGGTGTCCTTGTAATGGGGAGAGTGGATTCAGTACCAGACAGAAAACGGTGGTGGTTGAAGAAAGTGTGGAGAAAGGGGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAATGTGGAGGGTGGGGAGAGAGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGCTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGACCTGAGGGTGGCCTTAAACCATGAAATTGATAAAGATCAAAACACAAGGTTCACCAAAGGAATGGCCCATGATGATGGGAAGTTTTCAGTGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCAAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTACCCTCTTCTTTGGATGCTCAAATGGCCATGCCAGTGCCATCTTTTCTAAACACAGATTTTCAAAGGAGGAGGGAAACAGAAGGGGCTTGA 1194 0.4581 MSERMYPRLLVLDHTHLKMAWVKHQIQQKDGYLSYSPPLLSSSSSSPPPYPPGAAFHKESPPSTATTASSGTRISPAVLFIIVVLAVLFFISGILHLLVRFLIKYPSSSASAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCNGESGFSTRQKTVVVEESVEKGVFPVRLGKFKKLNVEGGEREVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHEIDKDQNTRFTKGMAHDDGKFSVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPSSLDAQMAMPVPSFLNTDFQRRRETEGA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11035g00002 397 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Vium11035g00002 397 FunFam RING-H2 finger protein ATL46 128 213 - -
Vium11035g00002 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 214 IPR013083 -
Vium11035g00002 397 SMART ring_2 166 207 IPR001841 -
Vium11035g00002 397 CDD RING-H2_EL5-like 165 208 - -
Vium11035g00002 397 Pfam Ring finger domain 165 208 IPR001841 -
Vium11035g00002 397 MobiDBLite consensus disorder prediction 43 70 - -
Vium11035g00002 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 70 360 - -
Vium11035g00002 397 SUPERFAMILY RING/U-box 145 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11035g00002 Vium-Chr11035 1324 3929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11035g00002 63 367 C3H Transcription Factor Family AT2G18650 40.299 2.21e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11035g00002 - - gmx:100806337 627.091