Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11034g00002 ATGGACAGAGAATTGCAATGGATCCTAGTCTTAGCAATTTGTGCTTCATCACTCATTAATATACTTGCTGAGAACTCTCAACTAACTTACTGGAACCTTGCCAATCTTGATTATTCAGGTGTTATAAGCATTGATTGTGGGGTAGACGAGGGCTACACTGACAAAACAACCAACTTACAGTACGAAGCAGATGATATCCAATTTGGTGAAATCAATAATACATCCTCAATTTACAACATGGGACATATAAGTCAAATTCATAAGCAGTTGAACACATTGAGAAGTTTCCCTTATGGGAAGAGAAATTGCTATACCTTAACACCCAAACAGGGAAAGAATAAGAAATACATAATCAGGGCATATTTTGCATATGGCAACTATGACAACGAAAATAAGCCACCAGTTTTTGATTTGCATCTTGGAGTCAATTTCTTGAAGACAATAAACTCTTCTGGGGATGTGGTAATTCGAATCGAAGCTGTTCATTTTGCCTCCACAGAAAGAATCGATTTATGCCTTGTGAACATCGATCAAGGGGTGCCCTTCATCTCATTGTTGGAGCTATGGCCTTTGGACAATTCCATTTATCAAAGTTCCTCCACTTTGTTAACACTAGATCTTCTCACTCGACTAAACCTTGGTGCCTCTGAAGATAACTTCATCAGGTACACAGATGATATATACGGAAGGTCATGGGAAGTTCCAAACAATTATAACAAGCGTCCGTTGAAAACCTCATCAGCTATTGATTTGGATAAATTTGATGATCCTTACAAACTGCCAGCAGAAGTTCTGAGTTCTGCAGTGGAGGCAAGAGATTCCAATTCCTTGGAATTCACACTCAATTATGGCACGCTTTCTGAATATTACGTTTATCTTCATTTTTTTGACTTTGAGGATCGGACCAATAAACAAAAACGAAGGTTGAATATTGTTATTAATGGTTTTGAAGATAACAATGTTACAGAATTTCATACTCTTTCGTACTGGAAGCCCTATACCATAATTCTACCTATAAAACAAGGGATGGGTATTCGGAAGATATTGATCGAAGCCAACTCTGATTCTGATGAGTTACCAGCAATGCTTAATGCTCTTGAGATTTACAGAGTACTACCTCAGTCAGATTCTTCCACACAAGAACAAGATGTTTATGCTATCCGGCACATCAAACATGTTTATATGATCAATAACATTAATTGGCAAGGAGACCCTTGTGGACCAAAGAATTTTACATGGGAAGGTGTGAAATGCAGCAATGGAGACACTCCAAGAATCATTTCATTAAACTTGAGCTCGAGCAAGTTGTCAGGAGAAATAGATGCCTCATTCTCCAACCTCACATGTTTGGTGACTTTGGATTTGTCAGACAATGAATTGTCAGGGGAGGTTCCAGAATTTTTTGCAAAACTGCCACAATTGCATTTCCTTAACTTGTCCAGGAATAGGCTCACAGGTTCAGTTCCTGAGAGTCTAAAGGCAAAGTCATCTAACAACTCTTTACAATTGAGTTTTGATGGAAATCTCCGTCCTTATCGGACAGGGTCATGCAAGAGCAACCACAAGAAGTTTATTATTCCATTAGTGGCATCTATAACAGCATGTGTTGCAGTGGTCCTCACAATATCTACCATAGTTATGGTGATCTGGAGACTTAGAAAAAAGGGAAAAGTGATTTCTTCAATTTCTGTGAAAGATGAGCCACTGAAATCAGCAAATCAAGTATTTTCTTACTCAGACATTCGTAGAATCACTAATAATTTCACAACAATGATTGGGAAAGGTGGATTTGGTAAGGTATACCTAGGTACTTTAGAGTGTGGCGAAAGAGTTGCTGTGAAGATACTTTCTTCACCATCAGCACAAGGGTATAAGGAATTTCAATCAGAGGCAAAACTGTTGATGCATGTTCATCACAGAAACGTGGTTTCTCTTGTGGGATACTGTGATGAAAGTGATACTAAAGCACTTATTTATGAATATCTTTCAGAAGGGAACCTCCAACAAAAATTATCAGATAAGAACCCCATTTTTTTGGAATGGACGCAAAGACTTAAAATTGCTATGGATGCAGCAAATGGGTTGGACTATTTGCATAATGGATGTAAGCCACCCGTAATTCACAGAGATTTGAAAACATCCAACATCTTACTAGATGAAAATATGCATGCCAAAATTTCAGACTTTGGGGTGTCTAAAACTTTTGCCAATGATAATGACACTTATGTCACAACTTACCCTGCAGGCACACCAGGTTACCTTGATCCTGAATTTTATTGCTCTGGGACACTCAACAAAAAGAGTGATGTTTATAGTTTTGGGATAATCCTACTAGAGTTAATCACTGGTCAACCAGCACTAACAGGAACTTCAGAGAATCTCAGTTACATACTTCCTTGGGTTAACAACAAACTGAGAACAGGAAATATCCAAGAAATTGTTGATCGAAGGTTACATGGGAAATACAATGGTGCTTCAGCATGGAAATTTGTAGGGATAGCCATGTCATGTCTCCCTCAAGTTCCAATTCACAGGCCTGACATAGGGCACATAGCCTTAGAATTAAAGGACTGTTTGTCTCTTGAATTATCACTTGAAAGGACTGTGAGCAACGTGAGAGAGTCATTGGCCATGAGTTCTAGGCAAATTGAATTCCATTAA 2661 0.3841 MDRELQWILVLAICASSLINILAENSQLTYWNLANLDYSGVISIDCGVDEGYTDKTTNLQYEADDIQFGEINNTSSIYNMGHISQIHKQLNTLRSFPYGKRNCYTLTPKQGKNKKYIIRAYFAYGNYDNENKPPVFDLHLGVNFLKTINSSGDVVIRIEAVHFASTERIDLCLVNIDQGVPFISLLELWPLDNSIYQSSSTLLTLDLLTRLNLGASEDNFIRYTDDIYGRSWEVPNNYNKRPLKTSSAIDLDKFDDPYKLPAEVLSSAVEARDSNSLEFTLNYGTLSEYYVYLHFFDFEDRTNKQKRRLNIVINGFEDNNVTEFHTLSYWKPYTIILPIKQGMGIRKILIEANSDSDELPAMLNALEIYRVLPQSDSSTQEQDVYAIRHIKHVYMINNINWQGDPCGPKNFTWEGVKCSNGDTPRIISLNLSSSKLSGEIDASFSNLTCLVTLDLSDNELSGEVPEFFAKLPQLHFLNLSRNRLTGSVPESLKAKSSNNSLQLSFDGNLRPYRTGSCKSNHKKFIIPLVASITACVAVVLTISTIVMVIWRLRKKGKVISSISVKDEPLKSANQVFSYSDIRRITNNFTTMIGKGGFGKVYLGTLECGERVAVKILSSPSAQGYKEFQSEAKLLMHVHHRNVVSLVGYCDESDTKALIYEYLSEGNLQQKLSDKNPIFLEWTQRLKIAMDAANGLDYLHNGCKPPVIHRDLKTSNILLDENMHAKISDFGVSKTFANDNDTYVTTYPAGTPGYLDPEFYCSGTLNKKSDVYSFGIILLELITGQPALTGTSENLSYILPWVNNKLRTGNIQEIVDRRLHGKYNGASAWKFVGIAMSCLPQVPIHRPDIGHIALELKDCLSLELSLERTVSNVRESLAMSSRQIEFH 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11034g00002 886 FunFam Leucine-rich repeat receptor-like protein kinase 564 661 - -
Vium11034g00002 886 ProSiteProfiles Protein kinase domain profile. 586 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11034g00002 886 PRINTS Leucine-rich repeat signature 450 463 - -
Vium11034g00002 886 PRINTS Leucine-rich repeat signature 471 484 - -
Vium11034g00002 886 Pfam Protein tyrosine and serine/threonine kinase 588 791 IPR001245 GO:0004672|GO:0006468
Vium11034g00002 886 FunFam Leucine-rich repeat receptor-like kinase 382 512 - -
Vium11034g00002 886 Pfam Leucine rich repeat 428 484 IPR001611 GO:0005515
Vium11034g00002 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672|GO:0006468
Vium11034g00002 886 Gene3D Transferase(Phosphotransferase) domain 1 662 875 - -
Vium11034g00002 886 Gene3D Phosphorylase Kinase; domain 1 569 661 - -
Vium11034g00002 886 SMART serkin_6 586 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11034g00002 886 CDD STKc_IRAK 592 856 - -
Vium11034g00002 886 FunFam Lectin-domain containing receptor kinase A4.3 662 872 - -
Vium11034g00002 886 PANTHER OS07G0107800 PROTEIN-RELATED 42 859 - -
Vium11034g00002 886 ProSitePatterns Protein kinases ATP-binding region signature. 592 614 IPR017441 GO:0005524
Vium11034g00002 886 SUPERFAMILY L domain-like 409 498 - -
Vium11034g00002 886 Gene3D Ribonuclease Inhibitor 386 522 IPR032675 -
Vium11034g00002 886 Pfam Malectin-like domain 44 371 IPR024788 -
Vium11034g00002 886 SUPERFAMILY Protein kinase-like (PK-like) 571 852 IPR011009 -
Vium11034g00002 886 Gene3D - 205 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11034g00002 Vium-Chr11034 48780 65623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11034g00002 17 859 Receptor kinase-like Gene Family AT2G19190 40.445 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium11034g00002 Malectin_like 3.7e-79 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11034g00002 - - mtr:11437028 955.666