Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11034g00001 ATGGAAGACTTATGTGGAGCCAAGGTTGGCAACATGGTACATAAGGCAAAGCCATATGTGTTAACTGTGGGGTTGCAATTTGGGATGGCAGGGACATACCTCTTCACCATGGCAAGTCTCAACCATGGAATGAGTCGTTTCGTGTTCATTGTGTATCGCAATGCCATTGCTGCATTGGCCCTTGCTCCCTTTGCCTTGATATTTGAAAGGAAAGTTAGGCCAAAGATGACATGGACCGTGTTCCTGCAGATACTAGTACTTGGATTTCTTGAGCCAGTGGTTGACCAAGGTTTTACTTTCTTGGGGATGCAATACACTTCTGCTTCCTTTGCATCTGCTGTTATGAATGCCGTACCCTCTGTAACCTTTGTGCTTGCACTATTTCTCAGGTTAGAGCGGGTAAACATGAGGGAACTACGTAGCCAGGCGAAAGTGGTGGGAACCTTGGTGACATTTGCTGGGGCTTTGTTAATGACACTATACAAAGGCCCTCAATTTGACCTATTTCATCACTCAAACACAACTCACCAACAAAGTGGAAGCCAATCCTCTCAGAATAATCACTCTCACTGGGTCTCAGGAACTCTCTTCATTTGCCTGGGTTGTCTCGCTTGGTCTTCTTTCTACATATTGCAGTCCATAACGGTGAAAAGGTACCCTGCGGAACTGTCACTGTCATCGTTGATATGCTTGGGAGGTGCATTGCAAAGTGCTGTGGTTGCTGTGATTGCAGATCGCAACCCTCGTGCATGGGCTATCGGTTTCGACTACACCCTCTATGGCCCTCTATACACTGGAATAATGAGTTCAGGAATAGCATATTATATACAGGGGTTGGTAATGCAAAGCAGAGGTCCAGTATTTGTGACATCCTTCAATCCTCTTTGCATGATTATTGTTACTGCTTTGGGCTCCCTTCTTCTTGGAGAGCACCTCTACCTTGGAAGTATCATTGGAGGCATGATTATCGCAGTGGGTCTTTACTCTGTGGTGTGGGGTAAAGGCAAAGATTATGGAGATGAGACGTCATCATCAGCAGGAAGAATAAAAGAAACAGAAACAATGCAGCTCCCAGTTAGCTCAATAAATAACAAATGA 1098 0.4517 MEDLCGAKVGNMVHKAKPYVLTVGLQFGMAGTYLFTMASLNHGMSRFVFIVYRNAIAALALAPFALIFERKVRPKMTWTVFLQILVLGFLEPVVDQGFTFLGMQYTSASFASAVMNAVPSVTFVLALFLRLERVNMRELRSQAKVVGTLVTFAGALLMTLYKGPQFDLFHHSNTTHQQSGSQSSQNNHSHWVSGTLFICLGCLAWSSFYILQSITVKRYPAELSLSSLICLGGALQSAVVAVIADRNPRAWAIGFDYTLYGPLYTGIMSSGIAYYIQGLVMQSRGPVFVTSFNPLCMIIVTALGSLLLGEHLYLGSIIGGMIIAVGLYSVVWGKGKDYGDETSSSAGRIKETETMQLPVSSINNK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11034g00001 365 PANTHER WAT1-RELATED PROTEIN 17 338 IPR030184 GO:0016020|GO:0022857
Vium11034g00001 365 Pfam EamA-like transporter family 30 159 IPR000620 GO:0016020
Vium11034g00001 365 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Vium11034g00001 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 255 335 - -
Vium11034g00001 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11034g00001 Vium-Chr11034 30363 33589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11034g00001 10 365 Nodulin-like Gene Family AT4G08300 47.339 2.89e-122 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11034g00001 - - gmx:100782997 613.609