Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1101g00007 ATGACGGTCTACATTCGACTCATTTTGCTGTCATGTTTCCTTCTTCCTCATTTTCATGACATCGAATGCAACACAGACTCAGACAGAGATGCCCTTCTTTCTTTCAAATCCCAACTGAGTGATCCAAAGAATTCCCTGTCTGGTTGGACTTCAGATTCCAATCCCTGCATCTGGAGCGGTGTCACCTGCTCCCAAGTTGGAGGGAGGGTCCAATATCTCGGGCTATCAGGACTTGAACTTTCTGGAAAACTACACCCTCGCCTTTCCAACCTCACTTACCTTAACTCGCTTGATCTTTCCCACAACAATTTTCATGGTGAAATTCCCCACGAGTTTGGTAATCTCCATCGTCTCCTAGCATTACACTTGTCATCCAATAATCTTGGAGGTAAAGTACCTTCATCACTAGGCAACCTCATTTCCATTCAGAATCTTGTCCTGGCAGGGAATCGTTTTGTGGGTGAGATTCCCACTGAACTCGGGAATCTCCGCACTCTTTCCTACCTTGAACTTTCAGAGAACTACTTCTCTGGTGAGTTTCCAATTTCTATCTCCACTATCTCCTCCTTAAAGTCATTATCTGTTTCGAAGAACAATCTATCAGGCAAGTTGCCGCAAAATTTTGGCCATGCCCTTTCAAGTTTAACCTTTCTGTCTCTGGCATTCAATAGTTTTGATGGGGTAATTCCTAATTCCATATCCAATGCCTCGAACCTTCAATATATTGACCTTGCTAACAATAAATTTCATGGCTCCTTACCTCTATTCAACAACTTGCTAAACCTTACCTACTTGGCTCTTGATAATAACTTTCTCTCGTCCACGACCTCGTTGACTCTTCAGTTCTTTGATTCTCTCAGGAACTCCACCTTGTTGAACATGCTGAGGATTAATGATAACCATTTGGCTGGGGAGCTTCCAAGCTCTTTTGCGAATCTGTCTAGCGATCTCAAACTATTCCATGTTGGACAGAACTGGTTAACCGGCAACATTCCACATGGAATTAAGAAATTTCAAAATCTCCTCTCCTTGTCCTTTGAAAATAATTTTTTCACTGGAGAGTTACCATCAGAAATGGGAGCTCTACAGAGACTGCAGAATATTGATGTTCATGCGAACAGATTGTCCGGGGAAATTTCTAACATTTTTGGCAATTTAACAAATCTTTATACCCTTGCAATGGGAAATAATCAGTTCTCGGGCAGAATTCCCACAAGTATTAGACAATGCAAGGGGTTATTTTCTCTTGATTTGAGAATGAATAGGCTCATTGGGACCATACCAAAGGAGATCTTTCAGCTTTCTTCTTTAGCATCCTTGTATTTAGCTACAAATTTCCTGCATGGTTCGCTTCCTAATGAGGTCGGCACCATGACACAACTTGAGACATTGGATGTTTCTGGCAACCAGTTGTCAGGGAACATTCCTAAGGAAATAGAGTCCTGTTTCAGCTTGAAGACGCTTGTGATGGCAAGAAACAAATTCAGTGGAGCAATCCCAACTAATCTTGGGAATTTAGCATACCTTCAGACTTTGGATTTATCATCAAACAATCTCATTGGCCTTATTCCGGTAAGTTTAGAAAAGCTCCGTCATATACAGACATTAAATTTGTCTTTCAACCAGTTGGAAGGGGAGGTTCCAATTAATGTTGTTTCTATAAACATTAGCCAGTTTGATTTTCGAGGGAACAATCAACTGTGCAGCTCAAACAAGGAAATCATGCAGAATTTGGGAGTACTCCTGTGTGCTGTTGGTAAAAAGAAGAAAAAGATTCTAGTACCTATCATCCTTGCAGTTGTTGTTGCTACTGCTCTGTTAATTTCAATGCTACTTCTATTTTGGACAAAAACGTCCCGAAGGAAGAAAATAAATGAGAGGAAAACCGGGATATCAGTGGCTCCTTTCAGAGGGTTACCTCAAAAAATATCTTATGCTGATATTCGGATAGCAACAAATAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAAGCTTTGGCTCTGTGTATAAGGGTGTTTTCAGCTTCAGCACAGGTGAAACTGCCACCCTTGCTGTGAAAGTCCTCGAGTTGCAACAAAGCAAAGCTTCTCGGAGTTTCAATGCTGAATGTGAGGTTTTGAAAAATGTTAGGCATCGCAACCTGGTGAAGGTTATCACTTCTTGTTGCAGCATTGATTATAAAGGACAGGAATTCAAGGCCCTCGTTCTGCAACTCATGCCCAATGGTAACTTGGACGTAAGCCTACACCCGGAAAACGAGTCCGGGGGATCCTTTCTAAACTTGCTGCAAAGATTGAACATTGCTATTGATGTTGCTTGTGCTATGGACTATTTGCACCATGATTGTGATCCACCAATACTGCATTGTGATCTGAAACCCGCCAATGTCCTTCTAGATGAAACTATGGCTGCACATGTTGCTGATTTTGGATTGTCAAGGTTTCTCTATCAAAATAGGCCCGAGAGGCAGAGTACCACTCTGGGAATGAAGGGATCAATCGGCTATATTGCCCCAGAATATGGTTTTGGAAGCAAGGCTTCAACTGAGGGTGATGTGTACAGTTTTGGGATTCTACTGCTAGAGATGTTCACAGGTAAAAGACCAACTGATGAAATGTTCAAAGAAGGGTTAAGCCTCCACAAATTTGTCTCAAGCATGGATGAGAATGAAGTAGTGAAGGTTGCTGATCGAAGGTTCATTGAAGATTATGAATATTCAACACAAAGCTCAAACAGTGATGATCATAGCAGTGGTTTAGACAGCAACACACATTGGTTGCATAAAGCTGAGGAGTGCATCGCTGATGCGTTAAGAGTTGGTCTGAGTTGCACAGTTGATCAACCCAAAGAACGATGGAGCATGAGAGAGGCCTCATCAAAATTGCAAGCTATTAAGCACTCTATGCTGACTTTTTGA 2919 0.4166 MTVYIRLILLSCFLLPHFHDIECNTDSDRDALLSFKSQLSDPKNSLSGWTSDSNPCIWSGVTCSQVGGRVQYLGLSGLELSGKLHPRLSNLTYLNSLDLSHNNFHGEIPHEFGNLHRLLALHLSSNNLGGKVPSSLGNLISIQNLVLAGNRFVGEIPTELGNLRTLSYLELSENYFSGEFPISISTISSLKSLSVSKNNLSGKLPQNFGHALSSLTFLSLAFNSFDGVIPNSISNASNLQYIDLANNKFHGSLPLFNNLLNLTYLALDNNFLSSTTSLTLQFFDSLRNSTLLNMLRINDNHLAGELPSSFANLSSDLKLFHVGQNWLTGNIPHGIKKFQNLLSLSFENNFFTGELPSEMGALQRLQNIDVHANRLSGEISNIFGNLTNLYTLAMGNNQFSGRIPTSIRQCKGLFSLDLRMNRLIGTIPKEIFQLSSLASLYLATNFLHGSLPNEVGTMTQLETLDVSGNQLSGNIPKEIESCFSLKTLVMARNKFSGAIPTNLGNLAYLQTLDLSSNNLIGLIPVSLEKLRHIQTLNLSFNQLEGEVPINVVSINISQFDFRGNNQLCSSNKEIMQNLGVLLCAVGKKKKKILVPIILAVVVATALLISMLLLFWTKTSRRKKINERKTGISVAPFRGLPQKISYADIRIATNNFAAENLIGKGSFGSVYKGVFSFSTGETATLAVKVLELQQSKASRSFNAECEVLKNVRHRNLVKVITSCCSIDYKGQEFKALVLQLMPNGNLDVSLHPENESGGSFLNLLQRLNIAIDVACAMDYLHHDCDPPILHCDLKPANVLLDETMAAHVADFGLSRFLYQNRPERQSTTLGMKGSIGYIAPEYGFGSKASTEGDVYSFGILLLEMFTGKRPTDEMFKEGLSLHKFVSSMDENEVVKVADRRFIEDYEYSTQSSNSDDHSSGLDSNTHWLHKAEECIADALRVGLSCTVDQPKERWSMREASSKLQAIKHSMLTF 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1101g00007 972 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 740 971 - -
Vium1101g00007 972 SUPERFAMILY L domain-like 318 570 - -
Vium1101g00007 972 SMART serkin_6 655 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1101g00007 972 Gene3D Phosphorylase Kinase; domain 1 638 738 - -
Vium1101g00007 972 FunFam LRR receptor-like serine/threonine-protein kinase EFR 628 739 - -
Vium1101g00007 972 Gene3D Transferase(Phosphotransferase) domain 1 740 970 - -
Vium1101g00007 972 Pfam Leucine rich repeat 484 543 IPR001611 GO:0005515
Vium1101g00007 972 Pfam Leucine rich repeat 415 471 IPR001611 GO:0005515
Vium1101g00007 972 ProSiteProfiles Protein kinase domain profile. 655 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1101g00007 972 PANTHER OS04G0122200 PROTEIN 166 968 - -
Vium1101g00007 972 SMART LRR_typ_2 212 235 IPR003591 -
Vium1101g00007 972 SMART LRR_typ_2 530 554 IPR003591 -
Vium1101g00007 972 SMART LRR_typ_2 259 285 IPR003591 -
Vium1101g00007 972 SMART LRR_typ_2 91 114 IPR003591 -
Vium1101g00007 972 SMART LRR_typ_2 506 529 IPR003591 -
Vium1101g00007 972 SMART LRR_typ_2 115 139 IPR003591 -
Vium1101g00007 972 SMART LRR_typ_2 187 210 IPR003591 -
Vium1101g00007 972 SMART LRR_typ_2 386 410 IPR003591 -
Vium1101g00007 972 SMART LRR_typ_2 458 482 IPR003591 -
Vium1101g00007 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Vium1101g00007 972 Gene3D Ribonuclease Inhibitor 143 212 IPR032675 -
Vium1101g00007 972 Gene3D Ribonuclease Inhibitor 26 142 IPR032675 -
Vium1101g00007 972 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Vium1101g00007 972 Gene3D Ribonuclease Inhibitor 213 577 IPR032675 -
Vium1101g00007 972 ProSitePatterns Protein kinases ATP-binding region signature. 661 687 IPR017441 GO:0005524
Vium1101g00007 972 SUPERFAMILY Protein kinase-like (PK-like) 631 962 IPR011009 -
Vium1101g00007 972 Pfam Protein tyrosine and serine/threonine kinase 658 876 IPR001245 GO:0004672|GO:0006468
Vium1101g00007 972 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 59 287 - -
Vium1101g00007 972 FunFam Inactive leucine-rich repeat receptor-like protein kinase 288 578 - -
Vium1101g00007 972 SUPERFAMILY L domain-like 25 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1101g00007 Vium-Chr1101 94405 97583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1101g00007 26 967 Receptor kinase-like Gene Family AT3G47570 39.182 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium1101g00007 PK_Tyr_Ser-Thr 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1101g00007 - - gmx:100776054 1293.1