Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1101g00004 ATGTCACAGCCAAGGCAAAACAAGATGATGAGTCCAAACCTTGGAAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGATTGGCCTGGGAGACAAAGAGAGACTCTCTGAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCGGTTGTCATCACCGATAGAATCACTGGAAGATCAAAAGGATATGGCTTTGTCACCTTTAGGGACCCAAATTCTGCATCAAGGGCTTGTCTCAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAACCTTGCAGCCCTTGGTGCCCATAAATTTGATCCATCCACAACAGGAAGACAAAAATTCAGTAGCCCTTCATGGAATATGGCACCAGTCCCATTGCAAGGCACCTCCACATATTACAATCAACACATACCTCACTACCCAATTCCCTATCCAACCTACAGGTATCCTGGTTTTACTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCCGTTTCCCCTCCGCTGGTATCCAGCATATTACCAGCCCTTTTATGGCCTTGGCAGACAGATTATTCCAACAACCTATGTGAAAAAGGTCATACCAGACACGTCTCAGGAGCTCACAGTTGTTGGTTTTTCAGAGCCTATTTCATCCTCTCCCTCAATTCCCACCACTGGATTAGTCACCGGAACAGTACCTGGGACAGAAGTGGTAGAATCCCCTCAAGAACAGACATCTTCAACTACTTAA 759 0.4466 MSQPRQNKMMSPNLGKQVGDTTYTKIFVGGLAWETKRDSLKRYFDQFGEILEAVVITDRITGRSKGYGFVTFRDPNSASRACLNPYPVIDGRRANCNLAALGAHKFDPSTTGRQKFSSPSWNMAPVPLQGTSTYYNQHIPHYPIPYPTYRYPGFTHPQDLYEMNYNNAYGGQPFPLRWYPAYYQPFYGLGRQIIPTTYVKKVIPDTSQELTVVGFSEPISSSPSIPTTGLVTGTVPGTEVVESPQEQTSSTT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1101g00004 252 Gene3D - 1 113 IPR012677 -
Vium1101g00004 252 PANTHER BOULE-RELATED 9 215 - -
Vium1101g00004 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Vium1101g00004 252 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
Vium1101g00004 252 CDD RRM_RBM24_RBM38_like 24 99 - -
Vium1101g00004 252 SMART rrm1_1 25 97 IPR000504 GO:0003723
Vium1101g00004 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 81 IPR000504 GO:0003723
Vium1101g00004 252 MobiDBLite consensus disorder prediction 224 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1101g00004 Vium-Chr1101 64597 66631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1101g00004 8 100 C2H2 Transcription Factor Family AT2G19380 38.710 1.09e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1101g00004 - - gmx:100788634 405.986