Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1101g00003 ATGGCCGTTCCTGAGAATGTCGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGACAACAGTGTAGTGTCATCGGACTCGGGTGATGTTGAACAATCGAAACCCCGAAGCGGGTCCATCAACGGCGATCAGAGGCTGAACAACGGCGTCTTCAACCACCAAGATAGAGTTCCTAGCACTATGTCAGTGTCCAATGGGAATTATAACTACAAGGCTCAAATGGGTCAGATGCATGGAAATGGGGTGAACAACGATGGGTATGGGATGAATGAGGAGAATGGGGGTGAGAGTTTCAAGAGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCATTCAGTAACCAATACTCTTGGCTACCTGCCTGGACCTGGTGCCGGTACCGGTAATGGTACTGGATTTGGTTACCCTAATAATTTTATTATGCTCAATGGTTATGGTAATGCTAATGGTCAAACTAACAGAAGGAGGAAGAATAATTATAATAATGGAAAGCGAAGAGTGAATCATAAAATAGATATGGAGAAAAGAGAGGAGATGATTAAGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTCACTGAAGAGCAGTTGGCAGCACTGTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGCGGAGATCCTAATTCTATTCTTCGGTTTGCCTTCATCGAGTTTACAGACGAAGAAGGTGCAAGAGCTGCTTTGAGCCTGTCGGGAACCATGCTCGGATATTACCCTTTGCGAGTTCTGCCTTCAAAAACTGCTATTGCACCTGTTAACCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCCGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACTCTGGCCGAGAGTGCAATTGCTGCTCTAAGCTGCAGTGGTGTGATTCTTGGTTCATTGCCCATAAGGGTAAGTCCATCGAAGACACCGGTTCGATCGCGTGCTCCTCGTCCTTCCATGCACTGA 1137 0.4494 MAVPENVGAKIGSSSQNLDNSVVSSDSGDVEQSKPRSGSINGDQRLNNGVFNHQDRVPSTMSVSNGNYNYKAQMGQMHGNGVNNDGYGMNEENGGESFKSDMRDLEELLSKLNPMAEEFVPHSVTNTLGYLPGPGAGTGNGTGFGYPNNFIMLNGYGNANGQTNRRRKNNYNNGKRRVNHKIDMEKREEMIKRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1101g00003 378 FunFam Polyadenylate-binding protein-interacting protein 10 284 362 - -
Vium1101g00003 378 MobiDBLite consensus disorder prediction 1 59 - -
Vium1101g00003 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 258 IPR000504 GO:0003723
Vium1101g00003 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 359 IPR000504 GO:0003723
Vium1101g00003 378 CDD RRM1_CID8_like 191 270 IPR034823 -
Vium1101g00003 378 MobiDBLite consensus disorder prediction 9 59 - -
Vium1101g00003 378 Pfam Ataxin-2 C-terminal region 109 121 IPR009818 -
Vium1101g00003 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 366 IPR000504 GO:0003723
Vium1101g00003 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 107 371 - -
Vium1101g00003 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 268 IPR000504 GO:0003723
Vium1101g00003 378 SMART rrm1_1 291 362 IPR000504 GO:0003723
Vium1101g00003 378 SMART rrm1_1 194 264 IPR000504 GO:0003723
Vium1101g00003 378 FunFam Polyadenylate-binding protein-interacting protein 11 156 270 - -
Vium1101g00003 378 CDD RRM2_CID8_like 286 367 IPR034825 -
Vium1101g00003 378 SUPERFAMILY RNA-binding domain, RBD 281 372 IPR035979 GO:0003676
Vium1101g00003 378 Gene3D - 154 270 IPR012677 -
Vium1101g00003 378 Gene3D - 277 372 IPR012677 -
Vium1101g00003 378 SUPERFAMILY RNA-binding domain, RBD 169 269 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1101g00003 Vium-Chr1101 50310 55348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1101g00003 195 361 Eukaryotic Initiation Factors Gene Family AT1G34140 24.561 1.05e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1101g00003 - - gmx:100788102 645.58