Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11018g00004 ATGGCTAATGAAAATGGTTTCCAGCTTAGTGTGAAGCTAGGTGAACCAACTCTTGTTCCACCAGCTGAAGAAAGAAAGAAGGGTTTGTATTTCCTATCTAACCTTGACCAGAACATTGCAGTGATTGTGAGAACTGTTTATTGCTTTAAAACTGCTGAGAGGGGGAATGAGAAAGCTGGGGAAGTGATAAAGAATGCATTGAAGAAGGTTCTTGTCCACTATTACCCTCTTGCTGGGAGACTCACTATAAGCTCAGAGGGTAAACTCATAGTGGATTGCACAGGGGAAGGTGCCTTGTTTATAGAGGCTGAAGCAAACTGTTCAATGGAAGAGATTGGTGACATCACAAAGCCAGACCCTGGAACTCTTGGTAAGCTGGTTTATGATATTCCTGGAGCAAAACACATTCTTCAGATGCCTCCTTTGGTTGCTCAGGTGACCAAGTTCAAATGTGGAGGCTTTGCTCTTGGGCTGTGCATGAACCACTGCATGTTTGATGGCATTGGTGCGATGGAGTTTGTGAACTCTTGGGGACAAGTAGCCAGAGACTTGCCACTCTTAATCCCTCCAGTGCTGGACAGAAGCATACTCAAGGCTAGAAACCCACCAAAAATAGAGCACCTGCATCAAGAATTTGCTGACATAGAAGACAAATCAAACACTTCTAGTTTATACGAAGATGAAATGGTTTACAGGTCCTTCTGTTTTGACCCTGAGAAACTAAAGGAGCTGAAGATGAAAGCAATGCAAGATGGGGCTCTTGATGCATGCACAACATTTGAAGTCCTTTCAGCGTTTGTGTGGATAGCAAGAACCAAGGCACTGAAAATGTTACCTGAGCAACAAACAAAGCTTCTTTTTGCTGTTGATGGAAGGGCCAAGTTCAACCCTCCTCTTTCAAAAGGGTACTTTGGAAATGGAATTGTGCTAACAAATTCTGTGTGCCAAGCTGGGGAACTGACACAAAAGCCTTTGTCATATGCTGTGGGACTCATTCAAGATGCTATCAAGATGGTGACAGACAGCTACATGAGATCAGCCATTGATTACTTTGAGGTGACAAGAACAAGGCCTTCTCTTGCTTGCACTCTTCTGATCACAACTTGGTCTAGACTTTCCTTTCATACCACTGATTTTGGATGGGGAGATCCAGTGCTGTCAGGCCCAGTGTCACTGCCAGAGAAGGAAGTGATCTTGTTCCTCTCCCATGGCCAAGAGCGAAGAAATATAAATGTGCTTCTGGGTTTACCTTCTACTGTCATGAAAATTTTCCAAGAATTGATGCAGATATAA 1293 0.4362 MANENGFQLSVKLGEPTLVPPAEERKKGLYFLSNLDQNIAVIVRTVYCFKTAERGNEKAGEVIKNALKKVLVHYYPLAGRLTISSEGKLIVDCTGEGALFIEAEANCSMEEIGDITKPDPGTLGKLVYDIPGAKHILQMPPLVAQVTKFKCGGFALGLCMNHCMFDGIGAMEFVNSWGQVARDLPLLIPPVLDRSILKARNPPKIEHLHQEFADIEDKSNTSSLYEDEMVYRSFCFDPEKLKELKMKAMQDGALDACTTFEVLSAFVWIARTKALKMLPEQQTKLLFAVDGRAKFNPPLSKGYFGNGIVLTNSVCQAGELTQKPLSYAVGLIQDAIKMVTDSYMRSAIDYFEVTRTRPSLACTLLITTWSRLSFHTTDFGWGDPVLSGPVSLPEKEVILFLSHGQERRNINVLLGLPSTVMKIFQELMQI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11018g00004 430 Gene3D - 6 211 IPR023213 -
Vium11018g00004 430 FunFam Spermidine hydroxycinnamoyl transferase 9 212 - -
Vium11018g00004 430 Gene3D - 212 429 IPR023213 -
Vium11018g00004 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 17 427 - -
Vium11018g00004 430 FunFam Tryptamine hydroxycinnamoyl transferase 216 429 - -
Vium11018g00004 430 Pfam Transferase family 11 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11018g00004 Vium-Chr11018 40771 42989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11018g00004 9 428 Monolignol Biosynthesis Gene Families AT5G48930 33.796 3.87e-81 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11018g00004 K15400 - gmx:100804504 810.446