Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11018g00002 ATGATCAATTCACTTTGTGGAACCCTAAAGAGTGAGAACAACTCTAGAACCAAACTCCAAGCCACATCTTCAAATGAGTCAAAGAAAAATGCCACTCAATCATCTGGTGATCTTGACCAAACTGGCCTAACCCCACCAAGCTTAAACCTTCCTTCACTAAAATTTGACTTGGATGGAGATGTAGAAGTTCAGTCACCAGATAGTTCAATGTGGGAATCCTTTTTCGCTGACCAACTAGATGCTGATTTCATGATCTCTTCCCCAGTCAGGAACGTTCCCTCTCCGCAACTCTCTTCTTACAATTGCAGCTACAACTATGCTCATGGAATGCAAGGTCAGAGTCTCTCAGGGTGTTCCCCACCAAAGTTTTCATCTTCCCATGTTGGAGCCTTCAACAGCAGCCACAAAGGGAAAGGACTTAGCCCTCTTCACAGGGTCTTCAACTCACCAAACAATCAGTACATGCAGCATGTTGAAAACCTTTCCCTTCCAGCAATAGAAGAGTTCTTGGAAGACTATCAAGGCTATTCATCAACCAAGGTGTCTTCTGACATTGCAACTTCATCTGAATGCTTTGACTTGTCTACTCAAATCCCTTCATCCATATTGGATACCTTAACACTGCCCGATTCCTCAAGGTACCACGGTTCAGTCGATGAAGAATGTGGTGGCTCTTCTCAACTGTACCAAGAGAGTGACATCTATCATCATATGGGGTCCATGGCTAGTGCTTCCCTCTCACAGGCTCTACAACAAGAACGCTACCAAGAGAAACGGCAAAAGCAGCAAGCACTTCATCAACAACAACAACGCCAGCAAGACAGTCTCATGGTGCCTATTCCAATCGGAATCGAGCAGGAGCAAGACAGCGGCCTTCAACTGGTGCACCTGCTTCTGGCCTGCGCAGAGGCTGTGGCGAAAGAGGAATACATGTTAGCAAGAAGGTACCTCCACCACCTCAACCGAGTCGTCACTCCCTTAGGCGACTCCATGCAGCGCGTGGCGGCATGCTTCACCGATTCGCTCAGCGCCAGGCTCAATGCCACCCTCAGCCCGAAACCCTCCAAATCCCTCAGCCCCTCAAATTCCATGGAAGTCCTCAAAATCTACCAGATCGTGTACCAGGCCTGCCCTTACGTCAAGTTCGCCCATTTCACCGCCAACCAGGCCATCTTCGAAGCCTTCGAGACCGAGGAGCGTGTTCACGTCATCGACCTCGACATCCTCCAGGGCTACCAATGGCCCGCCTTCATGCAGGCCCTCGCCGCCCGCCCCACCACCGCTCCCTTCCTCCGCATTACCGGAGTTGGTCCCTCTCTCGACGCCGTCCGCGAAACCGGCCGCTGCCTTACCGAGCTCGCCCACTCCCTGCGCATCCCCTTTGAATTCCACGCCGTCGGAGAACAGCTCGAGGATCTCAAACCCCACATGCTGCACCGCCGTGTGGGGGAGGCTCTCGCTGTAAATGCAGTCAACCGCCTCCATCGCGTCCCCGGGAATCATCTGGGGAACCTTCTCACCATGATACGCGACCAGGCACCGAACATAGTGACCCTGGTGGAGCAAGAGGCGAGCCACAACGGACCCTACTTTCTGGGCCGGTTTCTCGAGGCGTTGCACTACTACTCGGCGATCTTCGACTCGCTGGACGCAACGTTTCCGGCGGATTCGGCACAGCGGGCAAAGGTGGAGCAGTACATTTTCGCGCCGGAGATACGGAACATCGTATCGTGCGAGGGCCCGGAGAGATTTGAGCGGCACGAGAGGCTGGAGAAGTGGCGGAAGATAATGGAAGGAAAGGGGTTCAAGGGCGTGGCACTGAGTCCAAACGCGGTGACTCAGTCGAAGATTTTGCTCGGGTTGTACTCGTGCGAAGGGTATAGGTTGACGGAGGATAAGGGCTGCTTACTGCTTGGGTGGCAGGATAGGGCCATCGTTGCGGCGTCTGCATGGCGGTGTTGA 1962 0.5331 MINSLCGTLKSENNSRTKLQATSSNESKKNATQSSGDLDQTGLTPPSLNLPSLKFDLDGDVEVQSPDSSMWESFFADQLDADFMISSPVRNVPSPQLSSYNCSYNYAHGMQGQSLSGCSPPKFSSSHVGAFNSSHKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGYSSTKVSSDIATSSECFDLSTQIPSSILDTLTLPDSSRYHGSVDEECGGSSQLYQESDIYHHMGSMASASLSQALQQERYQEKRQKQQALHQQQQRQQDSLMVPIPIGIEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNATLSPKPSKSLSPSNSMEVLKIYQIVYQACPYVKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPTTAPFLRITGVGPSLDAVRETGRCLTELAHSLRIPFEFHAVGEQLEDLKPHMLHRRVGEALAVNAVNRLHRVPGNHLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAQRAKVEQYIFAPEIRNIVSCEGPERFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWRC 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11018g00002 653 Coils Coil 252 272 - -
Vium11018g00002 653 MobiDBLite consensus disorder prediction 13 49 - -
Vium11018g00002 653 ProSiteProfiles GRAS family profile. 285 652 IPR005202 -
Vium11018g00002 653 MobiDBLite consensus disorder prediction 13 48 - -
Vium11018g00002 653 Pfam GRAS domain family 294 652 IPR005202 -
Vium11018g00002 653 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 247 647 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11018g00002 Vium-Chr11018 20547 22874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11018g00002 259 653 GRAS Transcription Factor Family AT1G66350 42.145 5.49e-100 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium11018g00002 GRAS 7.3e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11018g00002 - - gmx:100805039 1067.37