Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11014g00011 ATGTCGATGAGTGTCTTCGCTGTTTTTCTTGGTGCTCTGCTTGTTCAAGCCCAGGATCAATCAGGATTTATCAGCATAGATTGCGGAGCTCCATCGGACACGGACTACACTGAGCCAAAAACAGGCATAAATTACACATCAGATGCCAATTTCATAGACACGGGTGAAAGTGGGACAATAATACCTGAAACCATCAACACTGTCTACCAACGACAGATGATGAATGTGAGAAGCTTCCCAATAGGAAAAAGGAACTGCTACAAAATAAGCATCACCAAAGGTTCCACTTATCTCATCCGCACCAATTTTTTATACGGAAATTATGATAAGCTAAATAAGGCACCAAAGTTTGATATTCATCTGGGGGTTAACCACTGGTACACAGTGACTATAGACAATGCATCCACTCCCCAAGTGAATGAGATCATATATGTACCTTCACTGGATTATCTGCATATCTGTCTGGTTAACACAGGCCATGGCACACCCTTTATATCAGCTATAGAATTGAGGACTTTGAAAAATGGTACTTACGTCCCTGATTCTGGATCATTGGAATATTACAGGCGGTGGGATTTAGGTTCAAACGACAGCTACAGGTACAATGTTGATGTTTATGATCGTTTCTGGTATAACTATGGGGACAACAAGGATTGGAAACAAATAAATGCTTCCATTGCTGCTGGTTCTTTCGATCAGAATGATTACAAACCGCCAGGAATTGTCTTGAGTACCGCAGTTACACCAGTAAATGCTAGTGTCCCATTGGTAATAAGCTGGGAGCCACAAAATCCAACTGAAGAATACTATGTTTACATGCACTTCTTCGAGATTGAAGTGCTAAGGAAGAATCAGACAAGAGAATTCAATATCACCCAGAATGGAAGGCCATGGTTTCAAAATTTGTCTCCGTTTTCCCAGAGAATGAACACTATATATAGCAAATCAGGCATCAGTGGGGAAAAAATTGAATATTCGCTTGAGAAAGCCAAGAGTTCAAGCCTTCCTCCCATCATAAATGCCATTGAAATTTACAGAGTGATAAACTTCCAGCAGAAAGATACACACCAAGGAGATGTTGATGCGATTGCGAGCATCAAGTCGGTTTACGGAGTGAAAAGAGATTGGCAAGGTGATCCATGCGCCCCTGTAGCCTACTTGTGGGATGGTCTCAATTGTAGTTATCTCGGCAATAAGAACCCAAGAATCACAACTTTGAATTTATCTTCAAGTGAACTGTCAGGAAGAATAGATCCTACGATTTCAAATCTCATCATGTTGGAGCAGTTGGATTTATCCAACAATAACTTATACGGCGAAGTTCCTGATTTTCTATCTAGACTACAACATTTGAAGATGATAAATTTTGAGAACAACAACCTCACAGGTTCAATTCCCGAGGCACTAGTTCAAAAATCTAAGGAAGGCTTCCTATCACTAAGGGTGGGCCAAAATCCATATCTATGTGAATCCGATCAATGCAAGGAGAAGAGGAAGGAAAAGAAGAATATTGTTACTCCCTTATTAGCATCCGTTTGTGGGGTTTTGATCATTCTTATGACTGTGGCAGTTGTATTGTGGACTCTTGAAAGGAGAAAACCCAAAGGTGAGACTACTACAATTAGACTCAATTTTAATTGAAAAATTGCCAAAGCGGAAAGCACAGAACAAGAGGATTCATTACATCAACTAAAAAAACAGATATATTCATACTCTGATGTAGTTAGAATCACCAACAATTTCAGTACAGTCGTTGGTAAAGGTGGGTTTGGAACAGTTTATCTGGGTTATATTGATGACATTCCCGTGGCAGTGAAAATGCTGTCTCCATCTTCAGTTCATGGTTATCGACAATTTCAAGCAGAAGTTAAAATTCTAATGAGGGTTCATCATACGAATCTCACCTCCCTCGTTGGATATTGTAATGACGGAGATTATAAGGGTCTCATATATGAGTACATGGCTAACGGAGACTTACAACAACATCTTTCTGGTAAACACAGCAAATCAAAATTCTTGAGCTGGGAAGACAGACTTCGTATAGCAGTGGATGCAGCACTAGGATTGGAGTATCTTCAAACTGGTTGCAAGCCTCCTATAATCCACAGAGACATAAAATCTACAAACATCTTGTTGGATGAAAAGTTCCAAGCAAAATTATCAGATTTCGGTCTATCCAAAATTATCCCAATTGATGGAGGAACTCATGTGTCAACTGTTGTTGCTGGTACTCCCGGTTATCTAGACCCAGAGTACTACATATCCAATAGATTAACACATAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATCATCACTTATCAACCAGTAATAGTAATAGCACGGAATGAAGAAAGGGTTCACATCACTGAATGGGTCAGATCACTGATTGAAAGGGATATCAAGGCGATTGTTGACTCAAGGTTAGAAGGAGATTTTGACATTAATTCAGCTTGGAAAGCCGTAGAAATAGCAATGGCATGTGTTTCCTTTAATCCCAGTGAAAGGCCAATGCTGAGGATGATAGTGACTGAACTAAGAGATACTTTAGCAATCGAATTAGCTCGAACAAAACTCATTGATGCACATCTAACAACAGATTCTATTGAACCGCTCGCCATGAATCTGGACACTGAATTCACTCCTCTGGCGAGGTAA 2667 0.3978 MSMSVFAVFLGALLVQAQDQSGFISIDCGAPSDTDYTEPKTGINYTSDANFIDTGESGTIIPETINTVYQRQMMNVRSFPIGKRNCYKISITKGSTYLIRTNFLYGNYDKLNKAPKFDIHLGVNHWYTVTIDNASTPQVNEIIYVPSLDYLHICLVNTGHGTPFISAIELRTLKNGTYVPDSGSLEYYRRWDLGSNDSYRYNVDVYDRFWYNYGDNKDWKQINASIAAGSFDQNDYKPPGIVLSTAVTPVNASVPLVISWEPQNPTEEYYVYMHFFEIEVLRKNQTREFNITQNGRPWFQNLSPFSQRMNTIYSKSGISGEKIEYSLEKAKSSSLPPIINAIEIYRVINFQQKDTHQGDVDAIASIKSVYGVKRDWQGDPCAPVAYLWDGLNCSYLGNKNPRITTLNLSSSELSGRIDPTISNLIMLEQLDLSNNNLYGEVPDFLSRLQHLKMINFENNNLTGSIPEALVQKSKEGFLSLRVGQNPYLCESDQCKEKRKEKKNIVTPLLASVCGVLIILMTVAVVLWTLERRKPKGETTTIRLNFNXKIAKAESTEQEDSLHQLKKQIYSYSDVVRITNNFSTVVGKGGFGTVYLGYIDDIPVAVKMLSPSSVHGYRQFQAEVKILMRVHHTNLTSLVGYCNDGDYKGLIYEYMANGDLQQHLSGKHSKSKFLSWEDRLRIAVDAALGLEYLQTGCKPPIIHRDIKSTNILLDEKFQAKLSDFGLSKIIPIDGGTHVSTVVAGTPGYLDPEYYISNRLTHKSDVYSFGVVLLEIITYQPVIVIARNEERVHITEWVRSLIEKXDIKAIVDSRLEGDFDINSAWKAVEIAMACVSFNPSERPMLRMIVTELRDTLAIELARTKLIDAHLTTDSIEPLAMNLDTEFTPLAR 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11014g00011 889 Pfam Malectin-like domain 26 347 IPR024788 -
Vium11014g00011 889 CDD STKc_IRAK 585 850 - -
Vium11014g00011 889 ProSitePatterns Protein kinases ATP-binding region signature. 585 606 IPR017441 GO:0005524
Vium11014g00011 889 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 654 862 - -
Vium11014g00011 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Vium11014g00011 889 FunFam Leucine-rich repeat receptor-like kinase 359 490 - -
Vium11014g00011 889 SMART serkin_6 579 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11014g00011 889 ProSiteProfiles Protein kinase domain profile. 579 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11014g00011 889 SUPERFAMILY Protein kinase-like (PK-like) 561 848 IPR011009 -
Vium11014g00011 889 PANTHER OS07G0107800 PROTEIN-RELATED 24 854 - -
Vium11014g00011 889 SUPERFAMILY L domain-like 348 470 - -
Vium11014g00011 889 Coils Coil 548 567 - -
Vium11014g00011 889 Gene3D Phosphorylase Kinase; domain 1 562 653 - -
Vium11014g00011 889 Gene3D Ribonuclease Inhibitor 361 477 IPR032675 -
Vium11014g00011 889 Gene3D Transferase(Phosphotransferase) domain 1 654 863 - -
Vium11014g00011 889 Pfam Protein tyrosine and serine/threonine kinase 582 850 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11014g00011 Vium-Chr11014 50366 54683 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11014g00011 1 889 Receptor kinase-like Gene Family AT2G19210 47.170 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium11014g00011 Malectin_like 2.3e-113 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11014g00011 - - gmx:100795183 1406.73