Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11014g00010 ATGGGAATGTCATTGAGTTTCCTAGATACTTTTGTAGGAGTTCTGGTTCTTCTCATTCTCATTCAAGCTAAGGGCCAACCAGGATTCATCAGCATAGATTGCGGAGCTCAAGCAGGTGTGAACTATACTAAGCCGTCACTAGACATAAATTACGTTTCGGATGCAGATCTCATAAATACTGGTGTGAGTGGGAAAATATCATCTGAAAAGACCAGCAGACGAAGTAGTCAACGACAACTGTGGAGGCTGAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAGCGTCACAAAAGCCTCTAAGTATCTCATACGCACTTCTTTTCTGTACGGAAATTATGATGGCCGAAATATGTTACCACAGTTTGATCTTCTTCTCGGACCTAACCACTGGGTTACAGTCACTATATTCAATGCATCCAAGGACAAATTGAAGGAGATCATTCATGTACCTTCAATGGATTATGTGCAAATCTGTCTGGTTGACACAGGCAATGGCACACCATTTATATCAGTCATTGAATTGAGGACCTTGAAAAATGATACATACGTCACTCAATTCGGATCATTGCAACTTTACAATTACCTGCGCTGCGATTTGGGTTCAAACACAAGCTACAGTTACCCGGATGATGTTTATGATCGTTACTGGTATAGTGGTTCTTACTGGAATGCCTGTAACTTGGGCGAAAATTGGAAACCACTAAGTGCCTCCATTCCCGATGATTCTTTAAATGAGAATGAGTACAAGCCGGGAGCAACTATCATGAGCACCGCAGTTGAACCACAAAATGATAGTGCTCCGTTGGTAATAAGCTGGGAGCCACAACATGAAACTGACCAATTCTATGTGTATATGCACTTCACGGAAATTCAAGTGTTAACCACGAATCAGACAAGACTATTCAACATCATGCTGAACGCTGAATCATGGTTTTCAAATTTTTCTCCAGTGTATCATGGAATGAATACTATATATTCGATATCAGGCACCAGTGGGAAAGAAATTAAATTTTCCCTGGAGAGGACTGAAAATTCAACCCTCCCTCCCATCATCAGTGCCATTGAAATTTACAGAGTAATAGACTTACAGAAACCAGAAACATTCCAAGGAGATGTTGATGCGATTACTACCATCAAGTCAGTTTATGCGTTGAAAAGAGATTGGCAAGGCGATCCATGCGCCCCTTCAGCCTATTTGTGGAATGGTCTCAACTGTTCTGATCACGGAAATGATTATCCAAGAATCACAACTTTGAATTTATCTTCCAGTGGATTGTCTGGAAAGATTGACCCTTCAATTTCAAATCTCACCATGCTGGAGAAATTGGATTTATCAAACAATAGCTTAAACGGTGAAATTCCTGATTTTCTGTCACAACTACAACACTTGAAGATCTTAAACTTAGAGAAGAATAACCTCTCCGGTTTAATTCCCTCAGCACTTCATAGAGATTCCCTTACACTAAGTGTGGACCAAAATCCATATCTATGTGATCAACCTGATCAATGCAAGCCGGAGGAAAACAATAGCATTGTTATACCATTGGTAGCATCTGTTGGCGGGGTTTTGATTCTTCTGGTAGCAGTGGCAGCTATATTGTGGACTGCTAAAAGGAGAAAAGTGAAAGGTGATTCAACAGCTCTGACGGTAGAAAAGGATCAGAGTGAGAAATCACCGCAATACACTGAACAAGATGATTCATCACTGCAATCCCAAAAACAGATATATGCATACTCTGACATCGTTAAAATCACCGACAATTTCACTACAGTTGTTGGTAAAGGAGGATTTGGAACAGTTTATCTGGGCTATATCGAAGACACTCCAGTTGCAGTGAAAATGCTTTCCCCATCTTCTGTTCGTGGTTATCAACAATTTCAAACAGAGGTTAAACTTCTTATGAGAGTTCATCACAAAAATTTGACCTCCCTTGTTGGTTACTGTAATGAAGGAACCAATAAGGGTCTCATATACGAGTACATGGCTAATGGAAACTTACAACAACATCTCTCTGGTAAACGAAGCAAAAGAAATTTCTTCAGCTGGGAAAAGAGACTTCGTATAGCAGTGGATGCAGCCTCAGGATTGGAGTACCTGCAAAATGGTTGTAAGCCACCAATATTCCACAGAGACATAAAATCTACAAACATCTTGTTGAATGAACACCTCCAAGCAAAATTATCTGATTTTGGTCTATCCAAAATTATCCTAACAGATGGGGAAACTCATGTGTCAACTGTTATTGCTGGTACTCCTGGTTATCTAGACCCTGAATACTACCTAACCAATAGATTAACAGAGAAGAGCGACGTTTATAGCTTTGGTGTTGTGCTTTTAGAGATAATCACAAGTCAACCAGTGATAGCGAAGAATCAAGAAAAAACACATATAAGTGAATGGGTTAGGTCTTTGACTGCAAAAGGTGATATCAATGCCATTGTTGATTCAAGGTTGGAAGGAGACTTTGACAGTAACTCAGTTTGGAAAGCTGTAGAAATAGCAACGGCATGTGTATCTCCAAATCCCAACAGAAGGCCAATCATAAGTGTGGTGGTGAATGAACTGAAGGAGTCTTTAGCAATTGAATTAGCTCGAACTGAAGATAGAAGCACTAATACAAGTTATTCAGTTAAACAGGTCATCAGGAATCTGAATACAGAATCTCTTCCCCAGGCCAGATAA 2691 0.4002 MGMSLSFLDTFVGVLVLLILIQAKGQPGFISIDCGAQAGVNYTKPSLDINYVSDADLINTGVSGKISSEKTSRRSSQRQLWRLRSFPEGKRNCYKISVTKASKYLIRTSFLYGNYDGRNMLPQFDLLLGPNHWVTVTIFNASKDKLKEIIHVPSMDYVQICLVDTGNGTPFISVIELRTLKNDTYVTQFGSLQLYNYLRCDLGSNTSYSYPDDVYDRYWYSGSYWNACNLGENWKPLSASIPDDSLNENEYKPGATIMSTAVEPQNDSAPLVISWEPQHETDQFYVYMHFTEIQVLTTNQTRLFNIMLNAESWFSNFSPVYHGMNTIYSISGTSGKEIKFSLERTENSTLPPIISAIEIYRVIDLQKPETFQGDVDAITTIKSVYALKRDWQGDPCAPSAYLWNGLNCSDHGNDYPRITTLNLSSSGLSGKIDPSISNLTMLEKLDLSNNSLNGEIPDFLSQLQHLKILNLEKNNLSGLIPSALHRDSLTLSVDQNPYLCDQPDQCKPEENNSIVIPLVASVGGVLILLVAVAAILWTAKRRKVKGDSTALTVEKDQSEKSPQYTEQDDSSLQSQKQIYAYSDIVKITDNFTTVVGKGGFGTVYLGYIEDTPVAVKMLSPSSVRGYQQFQTEVKLLMRVHHKNLTSLVGYCNEGTNKGLIYEYMANGNLQQHLSGKRSKRNFFSWEKRLRIAVDAASGLEYLQNGCKPPIFHRDIKSTNILLNEHLQAKLSDFGLSKIILTDGETHVSTVIAGTPGYLDPEYYLTNRLTEKSDVYSFGVVLLEIITSQPVIAKNQEKTHISEWVRSLTAKGDINAIVDSRLEGDFDSNSVWKAVEIATACVSPNPNRRPIISVVVNELKESLAIELARTEDRSTNTSYSVKQVIRNLNTESLPQAR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11014g00010 896 Gene3D Ribonuclease Inhibitor 376 501 IPR032675 -
Vium11014g00010 896 SUPERFAMILY L domain-like 376 484 - -
Vium11014g00010 896 SMART serkin_6 589 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11014g00010 896 Gene3D Transferase(Phosphotransferase) domain 1 664 884 - -
Vium11014g00010 896 CDD STKc_IRAK 595 860 - -
Vium11014g00010 896 ProSitePatterns Protein kinases ATP-binding region signature. 595 616 IPR017441 GO:0005524
Vium11014g00010 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Vium11014g00010 896 FunFam Leucine-rich repeat receptor-like kinase 372 502 - -
Vium11014g00010 896 ProSiteProfiles Leucine-rich repeat profile. 441 463 IPR001611 GO:0005515
Vium11014g00010 896 MobiDBLite consensus disorder prediction 548 563 - -
Vium11014g00010 896 PANTHER OS07G0107800 PROTEIN-RELATED 30 862 - -
Vium11014g00010 896 SUPERFAMILY Protein kinase-like (PK-like) 567 858 IPR011009 -
Vium11014g00010 896 ProSiteProfiles Protein kinase domain profile. 589 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11014g00010 896 Gene3D Phosphorylase Kinase; domain 1 571 663 - -
Vium11014g00010 896 MobiDBLite consensus disorder prediction 548 571 - -
Vium11014g00010 896 Pfam Protein tyrosine and serine/threonine kinase 592 858 IPR001245 GO:0004672|GO:0006468
Vium11014g00010 896 Pfam Malectin-like domain 32 362 IPR024788 -
Vium11014g00010 896 Pfam Leucine Rich Repeat 442 461 IPR001611 GO:0005515
Vium11014g00010 896 Pfam Leucine Rich Repeat 465 485 IPR001611 GO:0005515
Vium11014g00010 896 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 664 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11014g00010 Vium-Chr11014 43049 47789 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11014g00010 1 896 Receptor kinase-like Gene Family AT1G51800 46.565 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium11014g00010 Malectin_like 1.6e-110 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11014g00010 - - pvu:PHAVU_005G162300g 1275.77