LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium11014g00009	ATGGAAACGTTGCGGAGTTTCCTTCTTGGTTTTGTTGGAGGTCTAGTTCTTGCCGTTCTGGTTCAAGCTCAGGACCAATCAGGATTCATCAGCTTAGATTGTGGAGCTCCTGAAGATGTGACCTATACTGAGTCCACAACAGGCATAAATTATACTTCAGACGCAAATTTGATTAATACTGGTGTGAGTAAGTCGATAGAAACTAATCTCAAACAACAGTATCAGCGACAAATGTGGACTGTGAGAAGCTTCCCGGAAGGAAAAAGGAACTGTTACAAAATAAGCGTCACAAGAGGCTCTAAGTATCTGATCAGGGTTAGTTTTTTGTACGGAAATTATGACGATCTGGATAAGACTCCAGAGTTTGATATTCATCTGGGGGCTAACCTGTGGGGTACGGTGAGCATAAACAATGGATCAATTGAAGTGGACAAGGAGATCATACATGTACCTTCACTGGATTATTTACAGCTCTGTCTTGTTGACACAGGCCATGGAACACCGTTTATATCAGTCATAGAATTGAGAACTTTGCCAAATAATATTTACGTCACTGAATCTGGATCATTGGAATTTTTCGAGCGGTGGGATATAGGTTCAAACAAAGGCTACAGATACAACTACGATGTTTATGATCGCTTTTGGAGATATGGCAACATAAATGAATGGACAGAATTAAATGTTTCGATTTCTGCTGATGCTTTAGACCAGGACGTGTACAGACCGCCAGCTATTGTGATGAGCACTGCAGCTACACCAGCAAATGTCAGTGCTCCATTGGTAATAAGATGGAAGCCAGATGATCCAACTGAACAATTCTATGTTTACTTGCACTTCATGGAGATTCAAGAGTTGGCGACGAATGAGACAAGAGAATTCAACATCTTGGAAAATGGTAAACTGAGGTTTTCAAAGTTTTCACCAAGGAATCTTCTTGTCAGCACTTTATATAGCTCGTCACCCTCCAGTGGGAAAGAAATTATATATTCTCTTGAAAAAACCGAAAACTCAACTCTGCCTCCCATCATCAATGCCCTTGAAATTTACAGCGTAATAGATTTCCCGCAATCAGATACGTTCAAAGGAGACGATGATGCCATTACAACCATCAAATCAGTTTATGGGGTGACAAGAAATTGGCAAGGTGATCCATGTACCCCTGTAGATTACTTGTGGGATGGTTTGAATTGTAGTTATAGCAAAAACGAGTCTCCAAGAATCACAACTTTGAATTTATCTTCAAGTGGGTTGTCAGGAAAGATAGACCCTTCAATTTCAAACCTAAGCATGTTGGAGAAGTTGGATTTATCAAACAATAGATTAAATGGTGAAATCCCTGATGTTCTGTCTCAATTACAACACTTAAAGATATTAAACTTGAAGAACAATAACCTCTCTGGTTCAATTCCCTCGGCACTTGTTGAGAAATCTAAGGGAGGTTCTTTGTCATTAAGTGTGGACCAAAATCTCTGTGAATCTGGTCAATGCAACGAGCAGGGCAAAGATGGTGGAAAGAAAAAGAGAAATGTTACACCCTTAGTAGCATCAGTTAGTGGGGTTGTGATCCTTCTCATTGTCGCAGCAGCTATATTATGGACGCTTAAAAGGAGAAAAATGAAAGCTTTGATAGTAGAAAAGGATCAAAGTCAGATCTCACCACAAAACACAGAACAAGATGATTTAATACTACCATTCAGAAAACAAATTTATTCGTACTCCGACATCCTTAAAATCACCAACAATTTCAATAAAACTCTCGGTAGAGGAGGATTTGGAACTGTTTATCTTGGTCATATCGATGACACTCCAGTTGCAGTGAAAATCCTTTCCTCATTGTCTGCCCGGGGTTTTCAACAATTTCAGGCAGAGGTTAAACTTCTAATGAGAGTTCATCACAAAAATTTAACCTCCCTTGTTGGTTATTGTAATGAAGAAAGCACAAAGGGTCTCATATATGAGTACATGGCTAATGGAAACTTACAAGAACATCTCTCTGGTAGTCACAGCAAAGCAAAATTCTTCACCTGGGAAGAAAGACTTCGTCTAGCAGTGGATGCAGCATTAGGTTTGGATTATCTGCAAAATGGTTGCAAGCCACCTATAATCCACAGAGACATAAAATCTACAAACATCTTATTGAATGAACACTTCCAAGCAAAGCTAGCCGATTTTGGTCTGTCCAAAATTATTCCAACCGAAGGGGGAACTCACGTGTCAACTGTTGTTGCTGGTACTCCTGGTTATCTGGACCCTGAGTACTTCATAACAAACAGATTGACAGATAAGAGTGATGTTTATAGTTTTGGTGTTGTTCTTTTGGAGATAATCACAAATCAACCAGTGATAATGAGGGATGGTGAAGAAAGTATTCACATAAGTGACTGGGTTAGATCCTTGGTTGCGAGAGGGGATATCGAGGCCATTGTTGACTCAAGGCTAGAAGGAGATTATGATACCAATTCAGTTTGGAAAGCAGTAGAAGTAGCAACAGCATGTGTGTCTCCAAATATGAACAAAAGGCCTATCACAAGCGTGATAGTGATTGAACTGAAAGAGTCTTTATCAATGGAAGTAGCTCAAACAAAATATAGAAGTATGTATTCAACAGATTCAGGGGTGACCTTGAATCTGAATACAGAATTTATTCCTCATGCCAGGTGA	2661	0.3953	METLRSFLLGFVGGLVLAVLVQAQDQSGFISLDCGAPEDVTYTESTTGINYTSDANLINTGVSKSIETNLKQQYQRQMWTVRSFPEGKRNCYKISVTRGSKYLIRVSFLYGNYDDLDKTPEFDIHLGANLWGTVSINNGSIEVDKEIIHVPSLDYLQLCLVDTGHGTPFISVIELRTLPNNIYVTESGSLEFFERWDIGSNKGYRYNYDVYDRFWRYGNINEWTELNVSISADALDQDVYRPPAIVMSTAATPANVSAPLVIRWKPDDPTEQFYVYLHFMEIQELATNETREFNILENGKLRFSKFSPRNLLVSTLYSSSPSSGKEIIYSLEKTENSTLPPIINALEIYSVIDFPQSDTFKGDDDAITTIKSVYGVTRNWQGDPCTPVDYLWDGLNCSYSKNESPRITTLNLSSSGLSGKIDPSISNLSMLEKLDLSNNRLNGEIPDVLSQLQHLKILNLKNNNLSGSIPSALVEKSKGGSLSLSVDQNLCESGQCNEQGKDGGKKKRNVTPLVASVSGVVILLIVAAAILWTLKRRKMKALIVEKDQSQISPQNTEQDDLILPFRKQIYSYSDILKITNNFNKTLGRGGFGTVYLGHIDDTPVAVKILSSLSARGFQQFQAEVKLLMRVHHKNLTSLVGYCNEESTKGLIYEYMANGNLQEHLSGSHSKAKFFTWEERLRLAVDAALGLDYLQNGCKPPIIHRDIKSTNILLNEHFQAKLADFGLSKIIPTEGGTHVSTVVAGTPGYLDPEYFITNRLTDKSDVYSFGVVLLEIITNQPVIMRDGEESIHISDWVRSLVARGDIEAIVDSRLEGDYDTNSVWKAVEVATACVSPNMNKRPITSVIVIELKESLSMEVAQTKYRSMYSTDSGVTLNLNTEFIPHAR	886

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium11014g00009	886	Pfam	Protein tyrosine and serine/threonine kinase	582	792	IPR001245	GO:0004672\|GO:0006468
	Vium11014g00009	886	ProSiteProfiles	Leucine-rich repeat profile.	430	452	IPR001611	GO:0005515
	Vium11014g00009	886	ProSiteProfiles	Protein kinase domain profile.	580	854	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium11014g00009	886	PRINTS	Leucine-rich repeat signature	452	465	-	-
	Vium11014g00009	886	PRINTS	Leucine-rich repeat signature	431	444	-	-
	Vium11014g00009	886	SMART	serkin_6	580	824	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium11014g00009	886	SUPERFAMILY	Protein kinase-like (PK-like)	560	844	IPR011009	-
	Vium11014g00009	886	PANTHER	OS07G0107800 PROTEIN-RELATED	30	854	-	-
	Vium11014g00009	886	SUPERFAMILY	L domain-like	369	473	-	-
	Vium11014g00009	886	Pfam	Malectin-like domain	32	351	IPR024788	-
	Vium11014g00009	886	Gene3D	Ribonuclease Inhibitor	366	482	IPR032675	-
	Vium11014g00009	886	CDD	STKc_IRAK	586	852	-	-
	Vium11014g00009	886	Gene3D	Phosphorylase Kinase; domain 1	564	654	-	-
	Vium11014g00009	886	Pfam	Leucine rich repeat	405	465	IPR001611	GO:0005515
	Vium11014g00009	886	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	655	863	-	-
	Vium11014g00009	886	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	701	713	IPR008271	GO:0004672\|GO:0006468
	Vium11014g00009	886	FunFam	Leucine-rich repeat receptor-like kinase	365	492	-	-
	Vium11014g00009	886	ProSitePatterns	Protein kinases ATP-binding region signature.	586	607	IPR017441	GO:0005524
	Vium11014g00009	886	Gene3D	Transferase(Phosphotransferase) domain 1	655	872	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium11014g00009	Vium-Chr11014	34312	39072	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium11014g00009	7	886	Receptor kinase-like Gene Family	AT1G51800	49.052	0.0	855

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Vium11014g00009		Malectin_like	1.1e-114	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium11014g00009	-		-	gmx:100785345	1289.25