Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11014g00008 ATGAAAATCATCATTAGCTTAATCACTGTTAATGACTTCTTCTCACAACATTCTTCAATCTCGGGAGGTGTTTTCAGTTTACTTAGTTTAGAAATGAAAGGATTTCTACTTGTGATTTTTCAACTCTCTTTAATTCTTTCTATCATTGTTCGTGCCCAGAATCCATCAGGATTCGTCAGCATTGACTGCGGACTTGTGGATGAACCAAGCTATACAGATGAAACTACCGACATCTCTTACTCTTCGGATGTCAATTTCACAGACGGTGGTGTAAGCTACAGCGTATCATCTACATATAAGCCTTCCCTTGCAAGACAGTTCTGGAATGTTAGAAGCTTTCCCGATGGAACCAGGCACTGCTATACCCTGGTTTCTCAAGGAAGTGGCAATAAATATTTGGTGAGGGCAAGGTTTGCATATGGAAGTTACGACGGAAAAGAATCTCTTCCCGAATTTGACATTTATATCGGAGAAAAATGGTGGGGATCAGTGGTGTTTGAGGATGCATCCAGTGTAGTCACCAAGGAAATCATTTATGCTGCTTCCTCAGATTACGTTCATGTTTGTTTATTCAACACTGGCAAGGGTACACCTTTTATTTCAGTTTTAGAGGTTAGAGTTCTTAACAGTGATGCCTACCTAGTCAACTATGGGGAGCTCTTGGCAAGGCTTGATGCAGGCTTACAAGATGGTGAAATAGTCAGATTTCCAGATGATGTCTATGATAGAATATGGACGCCTTATAACTCAACTGACTGGAATCAGATAGATACCCTCCTTACCATAGACCAAGGTGCTACTTCATTTAACTTTTTACCATTGCCACCCTCCATTGTCATGGGAACTGCAGCAATTCCAGCAAATGTCACCGACAATATAGAGCTCCGCTTCGTTCCCATGTATAATTCTTCCACACTTTATGTGTACATGTTCTTTGCTGAAATCCAGAAGCTTGAGGCAAACCAAACTAGAGAGTTCAACATTTTTGTAAATGGGAACATTTTAAATATTGATCCAATCAATCCTCCGTACCTGCAGAGTGAGTATTATATGGCTATAAGCGTAAATTCGTTGGAACTTTCGATTAATAAAACTAGTAGATCAACTCTTCCACCTCTTCTCAACGCCATTGAGATATATACGTCAAGAAACTTCTCACAATCAGAAACAAATCAGAAAGACGCTGATGGTATCAGAAATGTCAAGTCAATGTATGGAATCAAGAGAAACTGGCAAGGAGATCCTTGTACTCCACTGGTCTACTTGTGGGACGGTCTTAACTGCAGCTATGCTGAATCTGCTTCAGCAAAGATTGTATACTTGAACTTATCTTCCAGTGGTTTAATTGGTAATATAGCTTCTGGCATATCCAATCTGCAGTACATAGAATATTTGGATTTGTCAAACAACAACTTGACCGGGGCCGTGCCTGATTTCCTACATCAACTACGCTTCTTAAGAGTTCTAAACCTAGAAAACAATCAGCTATCAGGAACAATTCCAACGCAACTCATTCAACTTTCCCAGAACGGTTTACTTCAATCCAATTTTGGTGGAAATCCAGATCTTTGCACACAAGGTTCATGCAACAATAGTAATGGCAACAGGGTTATAGTTCCACTGGTGGCATCGCTGGGAGGAGCTTTTCTGATACTAATAATAGCAGTGATTTCTTTCTGCATACACAAAAGGAGACAACTAGCTCTCCGGAGAAAACAGATGGCCTATTCCAGAATAAAGGAGGAACTAGAGTCTAATAAACAAGAATTCACCTATGCCGAAGTCCTGACAATGACCAAAAATTTAGAAAGAGTTGTAGGGAAAGGAGGATTTGCAACAGTCTACTATGGCCGGATAGATGATACTGAGGTAGCTGTCAAAATGCTCTCTCCTTCAGCCCAAGGGTATCTGCAATTTAAGGCAGAGGCCAAATTTGTTGCTGTAGTTCATCATAAATTTTTAACTTCTCTAATAGGATATTGTGATGATGGCGAGAAAATGGCTCTCATCTATGAGTATATGGCTAATGGAGACTTCTCAAAACATTTATCAGGCAAAAGCAAAATTATATTGAGTTGGAACCAACGACTTCAAATTGCAGTGGATGCTGCAGAAGGATTGGAGTATTTGCACCATGGCTGCAATGCGCCAATTGTTCACAGAGATGTTAAGACTCAAAACATCTTGGTGAATGAAAATTTGAGGGGTAAACTAGCTGATTTTGGGTTGTCAAAGATCTATCCTAATGAAAGTGACACCCATATGGTCACAGTGGTAGCTGGCACCCTTGGTTATCTTGATCCAGAGTACCATAGATCAAACAGGTTGAAGGCAAAAAGTGATGTTTTCAGTTTTGGAGTAGTACTGCTTGAGATAATCACAGGTCAACCTGCTATAACCAAATCTGAAGAGAAAATTCACATAATTCAATGGGTTGATTCTGAGCTTCTTGAAAAGGAGATCAAAGATATTGTAGATTCAAGATTGCAGGGAGAATTTGACATTGATTCTGTAAAGAAGGTTTTAGACATTGCAATGGCTTGTGTAGCACCCATTTCCATTAACAGGCCAACCATGAGTCATGTAGTTCACGAACTGAAACAGTGTTTGTCAAACGAGATTATTCCTCCCTTTAACTCTGACAATCTTAAGAGTTCATCCAACAGCTCAATCACTGTTTCCTTTGATGGAATTAGTGGACTGAGCTCTCTAGTGAGATAG 2721 0.3984 MKIIISLITVNDFFSQHSSISGGVFSLLSLEMKGFLLVIFQLSLILSIIVRAQNPSGFVSIDCGLVDEPSYTDETTDISYSSDVNFTDGGVSYSVSSTYKPSLARQFWNVRSFPDGTRHCYTLVSQGSGNKYLVRARFAYGSYDGKESLPEFDIYIGEKWWGSVVFEDASSVVTKEIIYAASSDYVHVCLFNTGKGTPFISVLEVRVLNSDAYLVNYGELLARLDAGLQDGEIVRFPDDVYDRIWTPYNSTDWNQIDTLLTIDQGATSFNFLPLPPSIVMGTAAIPANVTDNIELRFVPMYNSSTLYVYMFFAEIQKLEANQTREFNIFVNGNILNIDPINPPYLQSEYYMAISVNSLELSINKTSRSTLPPLLNAIEIYTSRNFSQSETNQKDADGIRNVKSMYGIKRNWQGDPCTPLVYLWDGLNCSYAESASAKIVYLNLSSSGLIGNIASGISNLQYIEYLDLSNNNLTGAVPDFLHQLRFLRVLNLENNQLSGTIPTQLIQLSQNGLLQSNFGGNPDLCTQGSCNNSNGNRVIVPLVASLGGAFLILIIAVISFCIHKRRQLALRRKQMAYSRIKEELESNKQEFTYAEVLTMTKNLERVVGKGGFATVYYGRIDDTEVAVKMLSPSAQGYLQFKAEAKFVAVVHHKFLTSLIGYCDDGEKMALIYEYMANGDFSKHLSGKSKIILSWNQRLQIAVDAAEGLEYLHHGCNAPIVHRDVKTQNILVNENLRGKLADFGLSKIYPNESDTHMVTVVAGTLGYLDPEYHRSNRLKAKSDVFSFGVVLLEIITGQPAITKSEEKIHIIQWVDSELLEKEIKDIVDSRLQGEFDIDSVKKVLDIAMACVAPISINRPTMSHVVHELKQCLSNEIIPPFNSDNLKSSSNSSITVSFDGISGLSSLVR 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11014g00008 906 SMART serkin_6 600 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11014g00008 906 FunFam Leucine-rich repeat receptor-like kinase 396 526 - -
Vium11014g00008 906 Pfam Leucine rich repeat 440 496 IPR001611 GO:0005515
Vium11014g00008 906 ProSitePatterns Protein kinases ATP-binding region signature. 606 627 IPR017441 GO:0005524
Vium11014g00008 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Vium11014g00008 906 SUPERFAMILY Protein kinase-like (PK-like) 584 866 IPR011009 -
Vium11014g00008 906 Gene3D Ribonuclease Inhibitor 397 518 IPR032675 -
Vium11014g00008 906 PANTHER OS07G0107800 PROTEIN-RELATED 59 871 - -
Vium11014g00008 906 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 674 875 - -
Vium11014g00008 906 Pfam Protein tyrosine and serine/threonine kinase 602 866 IPR001245 GO:0004672|GO:0006468
Vium11014g00008 906 Coils Coil 569 589 - -
Vium11014g00008 906 SUPERFAMILY L domain-like 399 523 - -
Vium11014g00008 906 Gene3D Transferase(Phosphotransferase) domain 1 674 882 - -
Vium11014g00008 906 ProSiteProfiles Protein kinase domain profile. 600 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11014g00008 906 Pfam Malectin-like domain 61 381 IPR024788 -
Vium11014g00008 906 Gene3D Phosphorylase Kinase; domain 1 573 673 - -
Vium11014g00008 906 CDD STKc_IRAK 606 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11014g00008 Vium-Chr11014 28770 33452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11014g00008 37 871 Receptor kinase-like Gene Family AT2G19210 47.356 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium11014g00008 Malectin_like 7.4e-98 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11014g00008 - - gmx:100778537 1362.05