LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium11014g00007	ATGGACGGTCTAAGTTGGGATTCTTCATCACAACTTGTTGGTAACATACCGATCTTGTGGAGCAGTCAGCCTCAGGACCTTGAAGGAGAGTATCATCATTCGATGCCACACCTTTGTTCGAGTGTTCACAATCAAACATGTTATCCGTATCCAAGTTCTGAAAAAGCGAGGGAGATGGTTCATCCATCCACTTCTGAGATAATGAGTATCTTGCCAAATATGAATCTGTCACAAAGAACAGCAACCATGCCTGTGAAATCAGGAGCAGTTGGAGCCAGTTGGGGAGAAGCTTTAACATCTCAATCATGCCCGTCCCTTTCGGCGAATATGAACCAAACTAGCAATTATGTAGCAGATTTCAACATGGCCCACCAGCAACAACACCTTATCAGCGGCACGCAAAACGTCAAGGCTACCTGCTCTCTCGAGTCACTTGATTGCTTGCTTTCAGCTACTAAGAATGGCAACACAGACACGTCTCTCGAAGATGATGGGATTTCCATGATGATTTTATCTGACTGCAGAAACTTATGCAACTTCAGTTATGGCAGTGCAGTCTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCCAGAAACAGTGACATGAGGTATGCATCAGTGAATGAGCTGGATGAAGCAGCGTCTCAAAGCTTCTCTGATCAATATATCAGTCAAGGAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAGGGAGCAATTCATGCTTCAGCGTTGCTCAGAATTCTTTTGCCACCGAAGGTGGTTTCAGGCTCATCTCAGAGACTTCACCAAAGTTCAAGAGACCCAGATGGAACAGGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCCGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTCGGCCAGTGAACTTGGGATTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAACGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGAGCACAAGTTAAAACACTAGAAAATTTAGGTAACAAGCTTGACACAATGAATTGTCCTCCTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCGTACAAACACATTTCCCAGTCCAAAACCCTAGCGGGAACACCTACAACCAACAGTCCAAGGGTAGGAAATGA	1320	0.4447	MDGLSWDSSSQLVGNIPILWSSQPQDLEGEYHHSMPHLCSSVHNQTCYPYPSSEKAREMVHPSTSEIMSILPNMNLSQRTATMPVKSGAVGASWGEALTSQSCPSLSANMNQTSNYVADFNMAHQQQHLISGTQNVKATCSLESLDCLLSATKNGNTDTSLEDDGISMMILSDCRNLCNFSYGSAVSSGESESNASNARNSDMRYASVNELDEAASQSFSDQYISQGRVIDSEVICTKGSNSCFSVAQNSFATEGGFRLISETSPKFKRPRWNRHPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRAQVKTLENLGNKLDTMNCPPNIAFSFNPSFPVQTHFPVQNPSGNTYNQQSKGRK	439

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium11014g00007	439	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	335	384	IPR011598	GO:0046983
Vium11014g00007	439	PANTHER	TRANSCRIPTION FACTOR HEC3-RELATED	156	431	IPR045843	GO:0003700\|GO:0006355
Vium11014g00007	439	MobiDBLite	consensus disorder prediction	277	294	-	-
Vium11014g00007	439	Gene3D	-	340	403	IPR036638	GO:0046983
Vium11014g00007	439	Pfam	Helix-loop-helix DNA-binding domain	345	384	IPR011598	GO:0046983
Vium11014g00007	439	Coils	Coil	374	394	-	-
Vium11014g00007	439	SMART	finulus	341	390	IPR011598	GO:0046983
Vium11014g00007	439	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	340	400	IPR036638	GO:0046983
Vium11014g00007	439	MobiDBLite	consensus disorder prediction	277	296	-	-

Showing 1 to 9 of 9 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium11014g00007	Vium-Chr11014	22819	24850	Tandem

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium11014g00007	94	426	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G21330	47.564	3.40e-79	248

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Vium11014g00007		HLH	3.1e-05	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium11014g00007	-		-	gmx:100793830	665.225

Showing 1 to 1 of 1 entries

Previous1Next