Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11014g00007 ATGGACGGTCTAAGTTGGGATTCTTCATCACAACTTGTTGGTAACATACCGATCTTGTGGAGCAGTCAGCCTCAGGACCTTGAAGGAGAGTATCATCATTCGATGCCACACCTTTGTTCGAGTGTTCACAATCAAACATGTTATCCGTATCCAAGTTCTGAAAAAGCGAGGGAGATGGTTCATCCATCCACTTCTGAGATAATGAGTATCTTGCCAAATATGAATCTGTCACAAAGAACAGCAACCATGCCTGTGAAATCAGGAGCAGTTGGAGCCAGTTGGGGAGAAGCTTTAACATCTCAATCATGCCCGTCCCTTTCGGCGAATATGAACCAAACTAGCAATTATGTAGCAGATTTCAACATGGCCCACCAGCAACAACACCTTATCAGCGGCACGCAAAACGTCAAGGCTACCTGCTCTCTCGAGTCACTTGATTGCTTGCTTTCAGCTACTAAGAATGGCAACACAGACACGTCTCTCGAAGATGATGGGATTTCCATGATGATTTTATCTGACTGCAGAAACTTATGCAACTTCAGTTATGGCAGTGCAGTCTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCCAGAAACAGTGACATGAGGTATGCATCAGTGAATGAGCTGGATGAAGCAGCGTCTCAAAGCTTCTCTGATCAATATATCAGTCAAGGAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAGGGAGCAATTCATGCTTCAGCGTTGCTCAGAATTCTTTTGCCACCGAAGGTGGTTTCAGGCTCATCTCAGAGACTTCACCAAAGTTCAAGAGACCCAGATGGAACAGGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCCGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTCGGCCAGTGAACTTGGGATTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAACGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGAGCACAAGTTAAAACACTAGAAAATTTAGGTAACAAGCTTGACACAATGAATTGTCCTCCTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCGTACAAACACATTTCCCAGTCCAAAACCCTAGCGGGAACACCTACAACCAACAGTCCAAGGGTAGGAAATGA 1320 0.4447 MDGLSWDSSSQLVGNIPILWSSQPQDLEGEYHHSMPHLCSSVHNQTCYPYPSSEKAREMVHPSTSEIMSILPNMNLSQRTATMPVKSGAVGASWGEALTSQSCPSLSANMNQTSNYVADFNMAHQQQHLISGTQNVKATCSLESLDCLLSATKNGNTDTSLEDDGISMMILSDCRNLCNFSYGSAVSSGESESNASNARNSDMRYASVNELDEAASQSFSDQYISQGRVIDSEVICTKGSNSCFSVAQNSFATEGGFRLISETSPKFKRPRWNRHPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRAQVKTLENLGNKLDTMNCPPNIAFSFNPSFPVQTHFPVQNPSGNTYNQQSKGRK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11014g00007 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Vium11014g00007 439 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 156 431 IPR045843 GO:0003700|GO:0006355
Vium11014g00007 439 MobiDBLite consensus disorder prediction 277 294 - -
Vium11014g00007 439 Gene3D - 340 403 IPR036638 GO:0046983
Vium11014g00007 439 Pfam Helix-loop-helix DNA-binding domain 345 384 IPR011598 GO:0046983
Vium11014g00007 439 Coils Coil 374 394 - -
Vium11014g00007 439 SMART finulus 341 390 IPR011598 GO:0046983
Vium11014g00007 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 400 IPR036638 GO:0046983
Vium11014g00007 439 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11014g00007 Vium-Chr11014 22819 24850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11014g00007 94 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.564 3.40e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium11014g00007 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11014g00007 - - gmx:100793830 665.225