Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11011g00001 ATGGCCACCACAACAACAACATCATCGTCATCATGTGATTTCTCATCCTTGGAATCTATTCAACACTATCTTCTTGAGCTCGAACCAGATTGTTCCAACACTCTCATGAGCGTTTACAGTCACCAAGTTTTGCGTTCTCCAATGTACAAACCACTCCCAAGCCCTACTTCGGAGGTTGTCCATGATGCAGATAATAACTTGTTGATAAAGACGCGTGAGGGTCACGCGCCGCCGGTGTGGAAGCGTTTCCGGGGTGTGAGGCGACGGCCGTGGGGGAAGTTTGCTGCCGAGATAAGGGATCCGAAGAGGAATGGTGCGAGAATTTGGCTTGGAACTTATGAAACTGAAGAAGAAGCTGGTTTGGCTTATGATAGAGCTGCATTTAAGATGCGTGGTAGCAAAGCTAAGTTAAATTTTCCTCATCTTATTGATTCTGATGTGTCTCTGAAACCTGTTAGCATGATGAAAGGTTTGAAGCGAAATAACTTTGAATCTTGTTCATCATTTTCACCTCCTTCAGACACAGTAAAAGAATCGAAAAAGAGGAAAAACTTGGCTGAGTTGTTGAATAAGTTGGCCAAGAACAGAAGACGATTGCAGGTGTTTGAAACCAGTTTATACACAAATGATGTTAATGTTCATCTATGTTTTAATTAG 657 0.4262 MATTTTTSSSSCDFSSLESIQHYLLELEPDCSNTLMSVYSHQVLRSPMYKPLPSPTSEVVHDADNNLLIKTREGHAPPVWKRFRGVRRRPWGKFAAEIRDPKRNGARIWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIDSDVSLKPVSMMKGLKRNNFESCSSFSPPSDTVKESKKRKNLAELLNKLAKNRRRLQVFETSLYTNDVNVHLCFN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11011g00001 218 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Vium11011g00001 218 FunFam Ethylene-responsive transcription factor 2 81 141 - -
Vium11011g00001 218 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Vium11011g00001 218 CDD AP2 81 142 IPR001471 GO:0003700|GO:0006355
Vium11011g00001 218 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Vium11011g00001 218 PANTHER DNA-BINDING DOMAIN 66 181 IPR044808 GO:0003700|GO:0009873
Vium11011g00001 218 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Vium11011g00001 218 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Vium11011g00001 218 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vium11011g00001 218 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11011g00001 Vium-Chr11011 830 1690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11011g00001 46 145 AP2-EREBP Transcription Factor Family AT2G44840 62.376 3.39e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium11011g00001 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11011g00001 K09286 - gmx:100527194 247.284