LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium11010g00001	ATGGACAACATGGGAGACCCAAAGAACATCATACAAGAACTGCTACAAGGTTTGGAGTTGGCAAGGCAGCTACAAGTGCATCTCCACACGCCTTCTTCGTCCCGCGAAACCCGTGACCTCCTCATCCACAACATCATATCCATCTTTGAAAAGGCACTTGAAATGGTAAATTGGAAAGGTCCGGTGCCTGCCGGTGAGTCATCACAACTGCCCCTGGCAGCCGCAATCCGAATGTCAGACTCACCTATCAGCAGTAGTCCCCAAAGTGAAGACTCTGAGAGAGATTTGAAGGACCAAGACAACAATGCTTTCAAGAAAAGAAACACTTTGCCCAGATGGACAAAAAGGATTCGGGTTACACCGGGAATGGGGGTGGAAGGGCCTCTTGATGATGGACATAGTTGGAGAAAGTATGGTCAGAAAGACATCCTTGGAGCCATGTACCCCAGGGGCTATTACAGATGTACCCACAGAACTGTGCAAGGTTGCATGGCAACAAAGCAAGTGCAAAGATCTGATGAGGACCCTACAATTTTTGAAATCAATTACCGAGGAAATCACACATGCACGGTGGCCCACAGCTCGGGTACTTCTTCAATAATTCCACTAGAAAACCAAGAACCAACTCTGAACAACACAAATCAGCAGCAGAATATCTTGCAGAGCCTTGAGCAGCAACCAAATGATTTACTTTTGAGTCTCCGAGACGGGTTGAGAGTCCAAACACAAAACCTTGATTCCACTGACCCATCATTTTCTCCATTCCGTTTCCCTTTATCAACAAACATGGAAAACGAAGGTCAGGTTTTCCCTCCTCATGTTCTTGAAAATTTCACTTCTCCTTATATGTCACCTGCTACATCCGGAATCAGCCACTTTTCTGTGTCTCCAACTGGGGTGAACAATTTTGGAGGGAACCAAAATTTGTCAACTTTTGAGTCTCATATCAATGACATGATCCCTGCTGTTACTTCTGCTCCAAACTCAGCAGCTGTTGCTTTAGAGTTTCCTTTCGACCAGTTTGGATTTGATGGTCAGAACCTCAGATTCGGTAACCCATGA	1062	0.4567	MDNMGDPKNIIQELLQGLELARQLQVHLHTPSSSRETRDLLIHNIISIFEKALEMVNWKGPVPAGESSQLPLAAAIRMSDSPISSSPQSEDSERDLKDQDNNAFKKRNTLPRWTKRIRVTPGMGVEGPLDDGHSWRKYGQKDILGAMYPRGYYRCTHRTVQGCMATKQVQRSDEDPTIFEINYRGNHTCTVAHSSGTSSIIPLENQEPTLNNTNQQQNILQSLEQQPNDLLLSLRDGLRVQTQNLDSTDPSFSPFRFPLSTNMENEGQVFPPHVLENFTSPYMSPATSGISHFSVSPTGVNNFGGNQNLSTFESHINDMIPAVTSAPNSAAVALEFPFDQFGFDGQNLRFGNP	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium11010g00001	353	SMART	WRKY_cls	129	191	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium11010g00001	353	Pfam	WRKY DNA -binding domain	130	189	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium11010g00001	353	ProSiteProfiles	WRKY domain profile.	124	192	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium11010g00001	353	SUPERFAMILY	WRKY DNA-binding domain	128	190	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium11010g00001	353	MobiDBLite	consensus disorder prediction	79	109	-	-
	Vium11010g00001	353	Gene3D	WRKY domain	122	192	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium11010g00001	353	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	5	247	IPR044810	GO:0003700
	Vium11010g00001	353	MobiDBLite	consensus disorder prediction	90	105	-	-
	Vium11010g00001	353	FunFam	WRKY transcription factor 53	115	192	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium11010g00001	Vium-Chr11010	19658	21395	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium11010g00001	8	269	WRKY Transcription Factor Family	AT4G23810	37.716	4.27e-52	174

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vium11010g00001		WRKY	6.5e-26	CL0274