LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium10988g00004	ATGTACAAGCAGTGGCTACAAAGCTTGGCAGTTATAACTCTTCGAGAGAATATGGCTTCAGGGTTCTGGGACCTAATATTTAGCAGCTTATATCGTTTTATGCAGATATTTGCAGTGCTGTTGGTAGGTTTGTCTGTTCTCAGAAGTCATGTAACTGTGGAACAACTTACCAAGTATGTACTATACTGTGAGTGGTTGATTTATGCAACTTGGAGGATGACAAACAGCTTAACATCATTGCTGCAGTCCATTGGAGCATCTGAACAAATATTCCAACTGATTAATCTTTTGCCCAGTGATCAATTCTTAGCCAAAGGCGTGAAATTGCACAGGTTAGCAGGTCATATTCAGTTTGCAAATGTATCCTTTTATTATCCTGCAAGGACTATGATGCCTGTTCTAGAACACTTGGACTTCTCCATAGAGGAAAATCAAGTCGTTGCCATTGTTGGTCTGAGTGGTAGTGGGAAGAGCACATTACTCAACCTTTTGCTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATCGATGGATTCCCTCTTAAAGAGTTGGATATTCGTTGGCTGCGTCAGAACATTAGTTATGTTGCACAGGAATCCCATCTCTTTCATATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCGGGAACATAAAACAAGAAGATATTGAACGGGCGGCGAAAAAGGCCTATGCCCATGATTTCATTTCTTCTCTTCCTAATGGATATGAAACCCTTGTTGATGACAATGCACTTAGTGGCGGACAAAAGCAGCGAATTGCCCTCGCCAGAGCCATTCTTAGGGACCCTGTTATAATGATACTTGATGAAGCAACCAGTGCTCTAGATTCTGAGAGTGAGCATTATATCCAGGAGTCGCTGTATGCGTTAAAAGATGAATCTAAAACAAGAACCATCATTATCATATCTCATAGGCTTTCTACTGCAAAAGCTGCTGATAAGATCTTTGTTATGGATGATGGTGGCATCATTGAGATGGGAGATCATGAAGAGCTTATGCTCAAGGATGGGCTCTATGCAAAATTAAATAAAATTCAAGCAAATATTTTGACTTGA	1083	0.4044	MYKQWLQSLAVITLRENMASGFWDLIFSSLYRFMQIFAVLLVGLSVLRSHVTVEQLTKYVLYCEWLIYATWRMTNSLTSLLQSIGASEQIFQLINLLPSDQFLAKGVKLHRLAGHIQFANVSFYYPARTMMPVLEHLDFSIEENQVVAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQNISYVAQESHLFHMDIKSNIKYGCPGNIKQEDIERAAKKAYAHDFISSLPNGYETLVDDNALSGGQKQRIALARAILRDPVIMILDEATSALDSESEHYIQESLYALKDESKTRTIIIISHRLSTAKAADKIFVMDDGGIIEMGDHEELMLKDGLYAKLNKIQANILT	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium10988g00004	360	SMART	AAA_5	143	331	IPR003593	GO:0016887
	Vium10988g00004	360	Pfam	ABC transporter	134	282	IPR003439	GO:0005524
	Vium10988g00004	360	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	108	355	IPR027417	-
	Vium10988g00004	360	SUPERFAMILY	ABC transporter transmembrane region	2	98	IPR036640	GO:0005524\|GO:0016020
	Vium10988g00004	360	Gene3D	-	114	355	IPR027417	-
	Vium10988g00004	360	FunFam	Multidrug ABC transporter ATP-binding protein	108	358	-	-
	Vium10988g00004	360	ProSitePatterns	ABC transporters family signature.	254	268	IPR017871	GO:0005524\|GO:0016887
	Vium10988g00004	360	Gene3D	ABC transporter type 1, transmembrane domain	2	113	IPR036640	GO:0005524\|GO:0016020
	Vium10988g00004	360	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	116	354	IPR003439	GO:0005524
	Vium10988g00004	360	PANTHER	ABC TRANSPORTER B FAMILY	2	353	IPR039421	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium10988g00004	Vium-Chr10988	14169	36195	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium10988g00004	90	355	Calmodulin-binding Proteins	AT2G36910	47.601	6.39e-70	235