Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10988g00004 ATGTACAAGCAGTGGCTACAAAGCTTGGCAGTTATAACTCTTCGAGAGAATATGGCTTCAGGGTTCTGGGACCTAATATTTAGCAGCTTATATCGTTTTATGCAGATATTTGCAGTGCTGTTGGTAGGTTTGTCTGTTCTCAGAAGTCATGTAACTGTGGAACAACTTACCAAGTATGTACTATACTGTGAGTGGTTGATTTATGCAACTTGGAGGATGACAAACAGCTTAACATCATTGCTGCAGTCCATTGGAGCATCTGAACAAATATTCCAACTGATTAATCTTTTGCCCAGTGATCAATTCTTAGCCAAAGGCGTGAAATTGCACAGGTTAGCAGGTCATATTCAGTTTGCAAATGTATCCTTTTATTATCCTGCAAGGACTATGATGCCTGTTCTAGAACACTTGGACTTCTCCATAGAGGAAAATCAAGTCGTTGCCATTGTTGGTCTGAGTGGTAGTGGGAAGAGCACATTACTCAACCTTTTGCTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATCGATGGATTCCCTCTTAAAGAGTTGGATATTCGTTGGCTGCGTCAGAACATTAGTTATGTTGCACAGGAATCCCATCTCTTTCATATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCGGGAACATAAAACAAGAAGATATTGAACGGGCGGCGAAAAAGGCCTATGCCCATGATTTCATTTCTTCTCTTCCTAATGGATATGAAACCCTTGTTGATGACAATGCACTTAGTGGCGGACAAAAGCAGCGAATTGCCCTCGCCAGAGCCATTCTTAGGGACCCTGTTATAATGATACTTGATGAAGCAACCAGTGCTCTAGATTCTGAGAGTGAGCATTATATCCAGGAGTCGCTGTATGCGTTAAAAGATGAATCTAAAACAAGAACCATCATTATCATATCTCATAGGCTTTCTACTGCAAAAGCTGCTGATAAGATCTTTGTTATGGATGATGGTGGCATCATTGAGATGGGAGATCATGAAGAGCTTATGCTCAAGGATGGGCTCTATGCAAAATTAAATAAAATTCAAGCAAATATTTTGACTTGA 1083 0.4044 MYKQWLQSLAVITLRENMASGFWDLIFSSLYRFMQIFAVLLVGLSVLRSHVTVEQLTKYVLYCEWLIYATWRMTNSLTSLLQSIGASEQIFQLINLLPSDQFLAKGVKLHRLAGHIQFANVSFYYPARTMMPVLEHLDFSIEENQVVAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQNISYVAQESHLFHMDIKSNIKYGCPGNIKQEDIERAAKKAYAHDFISSLPNGYETLVDDNALSGGQKQRIALARAILRDPVIMILDEATSALDSESEHYIQESLYALKDESKTRTIIIISHRLSTAKAADKIFVMDDGGIIEMGDHEELMLKDGLYAKLNKIQANILT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10988g00004 360 SMART AAA_5 143 331 IPR003593 GO:0016887
Vium10988g00004 360 Pfam ABC transporter 134 282 IPR003439 GO:0005524
Vium10988g00004 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 355 IPR027417 -
Vium10988g00004 360 SUPERFAMILY ABC transporter transmembrane region 2 98 IPR036640 GO:0005524|GO:0016020
Vium10988g00004 360 Gene3D - 114 355 IPR027417 -
Vium10988g00004 360 FunFam Multidrug ABC transporter ATP-binding protein 108 358 - -
Vium10988g00004 360 ProSitePatterns ABC transporters family signature. 254 268 IPR017871 GO:0005524|GO:0016887
Vium10988g00004 360 Gene3D ABC transporter type 1, transmembrane domain 2 113 IPR036640 GO:0005524|GO:0016020
Vium10988g00004 360 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 116 354 IPR003439 GO:0005524
Vium10988g00004 360 PANTHER ABC TRANSPORTER B FAMILY 2 353 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10988g00004 Vium-Chr10988 14169 36195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10988g00004 90 355 Calmodulin-binding Proteins AT2G36910 47.601 6.39e-70 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10988g00004 - - vum:124820309 704.901