Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10988g00003 ATGGAACAGGAAAACGAGAATTTGGAAGATATTTGCAGTGCTGTTGGTAGGTTTGTCTGTTCTCAGAAGTCATGTAACTGTGGAACAACTTACCAATCCATTGGAGCATCTGAACAAATATTCCAACTGATTAATCTTTTGCCCAGTGATCAATTCTTAGCCAAAGGCGTGAAATTGCACAGGTTAGCAGGTCATATTCAGTTTGCAAATGTATCCTTTTATTATCCTGCAAGGACTATGATGCCTGTTCTAGAACACTTGGACTTCTCCATAGAGGAAAATCAAGTCGTTGCCATTGTTGGTCTGAGTGGTAGTGGGAAGAGCACATTACTCAACCTTTTGCTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATCGATGGATTCCCTCTTAAAGAGTTGGATATTCGTTGGCTGCGTCAGAACATTAGTTATGTTGCACAGGAATCCCATCTCTTTCATATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCGGGAACATAAAACAAGAAGATATTGAACGGGCGGCGAAAAAGGCCTATGCCCATGATTTCATTTCTTCTCTTCCTAATGGATATGAAACCCTTGTTGATGACAATGCACTTAGTGGCGGACAAAAGCAGCGAATTGCCCTCGCCAGAGCCATTCTTAGGGACCCTGTTATAATGATACTTGATGAAGCAACCAGTGCTCTAGATTCTGAGAGTGAGCATTATATCCAGGAGTCGCTGTATGCGTTAAAAGATGAATCTAAAACAAGAACCATCATTATCATATCTCATAGGCTTTCTACTGCAAAAGCTGCTGATAAGATCTTTGTTATGGATGATGGTGGCATCATTGAGATGGGAGATCATGAAGAGCTTATGCTCAAGGATGGGCTCTATGCAAAATTAAATAAAATTCAAGCAAATATTTTGACTTGA 933 0.4041 MEQENENLEDICSAVGRFVCSQKSCNCGTTYQSIGASEQIFQLINLLPSDQFLAKGVKLHRLAGHIQFANVSFYYPARTMMPVLEHLDFSIEENQVVAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQNISYVAQESHLFHMDIKSNIKYGCPGNIKQEDIERAAKKAYAHDFISSLPNGYETLVDDNALSGGQKQRIALARAILRDPVIMILDEATSALDSESEHYIQESLYALKDESKTRTIIIISHRLSTAKAADKIFVMDDGGIIEMGDHEELMLKDGLYAKLNKIQANILT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10988g00003 310 Gene3D - 64 305 IPR027417 -
Vium10988g00003 310 PANTHER ABC TRANSPORTER B FAMILY 28 303 IPR039421 -
Vium10988g00003 310 FunFam Multidrug ABC transporter ATP-binding protein 58 308 - -
Vium10988g00003 310 Gene3D ABC transporter type 1, transmembrane domain 16 63 IPR036640 GO:0005524|GO:0016020
Vium10988g00003 310 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 66 304 IPR003439 GO:0005524
Vium10988g00003 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 305 IPR027417 -
Vium10988g00003 310 ProSitePatterns ABC transporters family signature. 204 218 IPR017871 GO:0005524|GO:0016887
Vium10988g00003 310 SMART AAA_5 93 281 IPR003593 GO:0016887
Vium10988g00003 310 Pfam ABC transporter 84 232 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10988g00003 Vium-Chr10988 14169 36693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10988g00003 40 305 Calmodulin-binding Proteins AT2G36910 47.601 4.34e-70 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10988g00003 - - vum:124820309 546.199