Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10988g00002 ATGTATTTTTTTTGTTTAAATAGGTATCAGAGAAAGGCAGCAAAGTTAATCCAAGATTTCACAGCTTGTGCAAATGACGTTGCTCTGGAAACACTTTCTTCAATAAGAACTGTACGAGCTTATGGAACAGGAAAACGAGAATTTGGAAGGTACAAGCAGTGGCTACAAAGCTTGGCAGTTATAACTCTTCGAGAGAATATGGCTTCAGGGTTCTGGGACCTAATATTTAGCAGCTTATATCGTTTTATGCAGATATTTGCAGTGCTGTTGGTAGGTTTGTCTGTTCTCAGAAGTCATGTAACTGTGGAACAACTTACCAAGTATGTACTATACTGTGAGTGGTTGATTTATGCAACTTGGAGGATGACAAACAGCTTAACATCATTGCTGCAGTCCATTGGAGCATCTGAACAAATATTCCAACTGATTAATCTTTTGCCCAGTGATCAATTCTTAGCCAAAGGCGTGAAATTGCACAGGTTAGCAGGTCATATTCAGTTTGCAAATGTATCCTTTTATTATCCTGCAAGGACTATGATGCCTGTTCTAGAACACTTGGACTTCTCCATAGAGGAAAATCAAGTCGTTGCCATTGTTGGTCTGAGTGGTAGTGGGAAGAGCACATTACTCAACCTTTTGCTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATCGATGGATTCCCTCTTAAAGAGTTGGATATTCGTTGGCTGCGTCAGAACATTAGTTATGTTGCACAGGAATCCCATCTCTTTCATATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCGGGAACATAAAACAAGAAGATATTGAACGGGCGGCGAAAAAGGCCTATGCCCATGATTTCATTTCTTCTCTTCCTAATGGATATGAAACCCTTGTTGATGACAATGCACTTAGTGGCGGACAAAAGCAGCGAATTGCCCTCGCCAGAGCCATTCTTAGGGACCCTGTTATAATGATACTTGATGAAGCAACCAGTGCTCTAGATTCTGAGAGTGAGCATTATATCCAGGAGTCGCTGTATGCGTTAAAAGATGAATCTAAAACAAGAACCATCATTATCATATCTCATAGGCTTTCTACTGCAAAAGCTGCTGATAAGATCTTTGTTATGGATGATGGTGGCATCATTGAGATGGGAGATCATGAAGAGCTTATGCTCAAGGATGGGCTCTATGCAAAATTAAATAAAATTCAAGCAAATATTTTGACTTGA 1230 0.3992 MYFFCLNRYQRKAAKLIQDFTACANDVALETLSSIRTVRAYGTGKREFGRYKQWLQSLAVITLRENMASGFWDLIFSSLYRFMQIFAVLLVGLSVLRSHVTVEQLTKYVLYCEWLIYATWRMTNSLTSLLQSIGASEQIFQLINLLPSDQFLAKGVKLHRLAGHIQFANVSFYYPARTMMPVLEHLDFSIEENQVVAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQNISYVAQESHLFHMDIKSNIKYGCPGNIKQEDIERAAKKAYAHDFISSLPNGYETLVDDNALSGGQKQRIALARAILRDPVIMILDEATSALDSESEHYIQESLYALKDESKTRTIIIISHRLSTAKAADKIFVMDDGGIIEMGDHEELMLKDGLYAKLNKIQANILT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10988g00002 409 SMART AAA_5 192 380 IPR003593 GO:0016887
Vium10988g00002 409 Pfam ABC transporter transmembrane region 6 113 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium10988g00002 409 Gene3D - 163 404 IPR027417 -
Vium10988g00002 409 FunFam Multidrug ABC transporter ATP-binding protein 157 407 - -
Vium10988g00002 409 SUPERFAMILY ABC transporter transmembrane region 4 147 IPR036640 GO:0005524|GO:0016020
Vium10988g00002 409 ProSitePatterns ABC transporters family signature. 303 317 IPR017871 GO:0005524|GO:0016887
Vium10988g00002 409 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 403 IPR003439 GO:0005524
Vium10988g00002 409 Gene3D ABC transporter type 1, transmembrane domain 3 162 IPR036640 GO:0005524|GO:0016020
Vium10988g00002 409 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 131 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium10988g00002 409 PANTHER ABC TRANSPORTER B FAMILY 5 402 IPR039421 -
Vium10988g00002 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 404 IPR027417 -
Vium10988g00002 409 Pfam ABC transporter 183 331 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10988g00002 Vium-Chr10988 14169 36694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10988g00002 18 404 Calmodulin-binding Proteins AT2G36910 38.579 1.21e-70 239