Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10984g00010 ATGGCAGAAGAGAATCCAAAGCCTCTGAATTACATCCCCGAGGTTATACTCAAGAAGCGCAAAAACAGGGAAGCATGGGCGTTAAGAAAGAAAGAGCAATTCCAGCACAAGAATTTTCAATCCATCAAGAAGCCCGAGGATTTCATCCACGAGTATCGCAACCAGGAAGTGGATCTCATTAGGATGAAGCGAAGGGTGAAGAGGAAACTTCCTCAAGTTCACTCCAACATATTGATAATCATTCGTATACAGGGGAAAAAGGACATGCATCCAAAAACAAGGAAGGTGCTGTACAGCTTGGGTTTGAGGAGTATGTTCAGTGCTGTTCTTGTGAAGCCAAGCGAGGGAATAATGGCCAAGCTACAGAGGGTGGAACCATATGTGACCTATGGATATCCAAACCTTAAAAGCATAAAAGAGTTAATTTACAAGAAAGGACTCGCCAGGATGGATGGGCGGAAAGTTCCCTTGACAGATAATAATGTTATTGAACAGGAATTAGGAAAGTTTGGTATTGTCTGCATAGAGGACATGGTGCATCAGCTGTATAATGCTGGTCCCCACTTTAAGGAAGTTGTCAGATTTATGTGGCCCTTTGTACTCAACAAGCCAGCCGAAGGATTGAAAGGATCTAAAACCCTATTCAAGGAGGGTGGAGACACAGGGAATCGTGAGGATCTCATCAATGAACTGATCGATAAAATGAATTAG 711 0.4304 MAEENPKPLNYIPEVILKKRKNREAWALRKKEQFQHKNFQSIKKPEDFIHEYRNQEVDLIRMKRRVKRKLPQVHSNILIIIRIQGKKDMHPKTRKVLYSLGLRSMFSAVLVKPSEGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGLARMDGRKVPLTDNNVIEQELGKFGIVCIEDMVHQLYNAGPHFKEVVRFMWPFVLNKPAEGLKGSKTLFKEGGDTGNREDLINELIDKMN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10984g00010 236 Gene3D - 182 236 IPR036919 -
Vium10984g00010 236 Gene3D - 77 181 IPR036919 -
Vium10984g00010 236 FunFam 60S ribosomal protein L7 77 181 - -
Vium10984g00010 236 CDD Ribosomal_L7_archeal_euk 77 236 IPR035808 -
Vium10984g00010 236 FunFam 60S ribosomal protein L7-1 isoform A 182 236 - -
Vium10984g00010 236 Pfam Ribosomal protein L30p/L7e 78 128 IPR016082 -
Vium10984g00010 236 PANTHER 60S RIBOSOMAL PROTEIN L7 9 236 IPR039699 -
Vium10984g00010 236 NCBIfam 60S ribosomal protein uL30 14 236 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vium10984g00010 236 SUPERFAMILY Ribosomal protein L30p/L7e 78 236 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10984g00010 Vium-Chr10984 79417 82240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10984g00010 1 236 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 55.061 1.26e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10984g00010 K02937 - gmx:100306107 426.787