Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10984g00002 ATGTTGTATTATGATGTTGTGTTTGTTGTGTGTTTTAGGGGGATCAAACGTTTTTACAAACGCTTTCACCTTGAACACTCAATGTATCTCATAGATGACTGTCTACAAGTAAATTGCACTGTTGGGGTTTTGCCTACCACCCGAGATAATTCCATGACTATAGAAGTTCCCGAATCTACCATTTCAACAAGTTTTGGGATGCTGTTTGAAGATGAGCAATCATCTGATGTTACGTTTTGTGTCGGAGGAAACAAGTTTTATGCGCATAAGATTGTATTGGCGGCTCGGTCAAGTGTGTTTAAATCTCAGTTTTTCTGTGGAACTGACAAGGTTGATAGAGAGATACTTGTCAATGAGATGGAGCCTAAGGTTTTCAAGGCATTACTGCACTTTATTTATAAAGATACTCTTATAGAAGATGAAGAACTCCATTTGTCAATGTCTTCATCCATGGCTTCTATCTCAGAATGGTATGTATCGAAGTTGCTGGCTGCTGCACACAAGTACGATTTACCAAGGCTAAAGTTGATGTGTGAATCTGTACTTTGCAAACATATATCTATAGATTCTGTTGCTCATATTCTGGTTATTTCTGATTGTTATGATGCCACTGAATTGAAGTTCATATGTCTGCAATTTTCAGCAGAAAACCTTAATGCTGTGCTGAAATCTGATGGTTTCAAGCATCTTAAGGAAAAGTGTCCACTTCTTCCATTTGAACTGCTAGAGACTGTGGCAGCAGGAATTGGGTGTGTCAGTGTTGACAGTGATGCAACCACACCTGAGCCAAATGAAATAGAAGCTGAGAGCACAAGTTATTATCCTTCCAGCGATGAGGAAAACCATCTGGGTTGGTAG 858 0.3928 MLYYDVVFVVCFRGIKRFYKRFHLEHSMYLIDDCLQVNCTVGVLPTTRDNSMTIEVPESTISTSFGMLFEDEQSSDVTFCVGGNKFYAHKIVLAARSSVFKSQFFCGTDKVDREILVNEMEPKVFKALLHFIYKDTLIEDEELHLSMSSSMASISEWYVSKLLAAAHKYDLPRLKLMCESVLCKHISIDSVAHILVISDCYDATELKFICLQFSAENLNAVLKSDGFKHLKEKCPLLPFELLETVAAGIGCVSVDSDATTPEPNEIEAESTSYYPSSDEENHLGW 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10984g00002 285 SUPERFAMILY POZ domain 51 186 IPR011333 -
Vium10984g00002 285 ProSiteProfiles BTB domain profile. 75 141 IPR000210 GO:0005515
Vium10984g00002 285 CDD BTB_POZ_BPM_plant 65 183 - -
Vium10984g00002 285 Gene3D Potassium Channel Kv1.1; Chain A 51 186 IPR011333 -
Vium10984g00002 285 Gene3D - 187 254 - -
Vium10984g00002 285 MobiDBLite consensus disorder prediction 257 278 - -
Vium10984g00002 285 MobiDBLite consensus disorder prediction 256 285 - -
Vium10984g00002 285 Pfam BTB/POZ domain 67 185 IPR000210 GO:0005515
Vium10984g00002 285 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 14 240 IPR045005 GO:0016567
Vium10984g00002 285 SMART BTB_4 75 186 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10984g00002 Vium-Chr10984 18058 19115 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium10984g00002 BTB 9.5e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10984g00002 K10523 - gmx:100809683 290.812