Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10970g00001 ATGAAGTGCTTTCACTATTTCAGAGATAAATCTAGAAACAGTAGGCAAAGGTCAGCACCTGAACTGAAGGAGAAAGAGAAAATGGACTTTTCAGGAGCTGAGAGGGTCACCAAGTCTTCAAGCTCATCTGCTTCACCCCGCGGTATACCAGAACTGTATGAGGAAAAGGGTCAGAATTTGAGGGTCTTCTCCCTCTCAGAGCTCAAGCGTGCAACAAGTGATTTCAACAGGCTTTTTAAGATAGGAGAAGGTGGATTTGGAAGTGTGTTTAAAGGTTCAATCCAGCCTGCTGATGGGAATGGGAATTCTGTTGTAGTTGCTATCAAAAGGCTTAACAAGGATGCATTACAGGGCCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAACACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGACGACGAACGAGGCATCCAGAGACTACTCGTGTATGAATACATGCCGAACAAAAGCTTGGAGTTTCATCTTTTCAATAAAGCTTTTGATCCTCTTCCTTGGAAAACTAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTAACTTATCTTCATGAAGAATTAGAAATTCAGGTGATATATCGAGATTTTAAATCTTCAAATATATTACTGGATGGAGATTTTAAGCCAAAGCTTTCTGATTTTGGACTTGCTAGGGAAGGGCCAGTAGCTGGTGATACTCATGTTTCAACAGCTGTGATGGGGACGTATGGTTATGCTGCTCCAGATTACATCGAGACAGGTCATCTCACAGCCAAGAGTGATGTGTGGAGTTTTGGAGTGGTTTTATATGAAATGCTTACTGGCAGGCGTTCAATGGAAAGAAACAGGCCTAAATCAGAGAAGAAACTGCTGGAGTGGGTGAAGCAATACCCTCCTGACAGCAAGAAGTTTGACACAATAATGGATCAGCGACTTCAAGGAGAGTATTCCAAGAATGGAGCAAGAAAACTCGCAAAACTCGCCGATCGTTGCCTGCGTAAGAGCGCGAAAGATCGGCCAACGATGAGTCAGGTGGTGGAGAGACTGCAGCAGATAATGGAAGACACTGATGAGGCAGATGACAGAAGTGTTGAGGTATCAGAAAATGGTCAAGCTGAGGCTGATGTGAAGGGAAATCAATTAAGGTCTTCAGAGTTGTGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAAAGTGTGGAGAGTGCTGGCAGAAAAAGATTTATGATCCTTCAGAGAGCCAATGTGTCCTCATAG 1281 0.4333 MKCFHYFRDKSRNSRQRSAPELKEKEKMDFSGAERVTKSSSSSASPRGIPELYEEKGQNLRVFSLSELKRATSDFNRLFKIGEGGFGSVFKGSIQPADGNGNSVVVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDDERGIQRLLVYEYMPNKSLEFHLFNKAFDPLPWKTRLEIALGAAQGLTYLHEELEIQVIYRDFKSSNILLDGDFKPKLSDFGLAREGPVAGDTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEMLTGRRSMERNRPKSEKKLLEWVKQYPPDSKKFDTIMDQRLQGEYSKNGARKLAKLADRCLRKSAKDRPTMSQVVERLQQIMEDTDEADDRSVEVSENGQAEADVKGNQLRSSELWKKRMEHLAKLGESVESAGRKRFMILQRANVSS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10970g00001 426 SUPERFAMILY Protein kinase-like (PK-like) 58 358 IPR011009 -
Vium10970g00001 426 PANTHER OS01G0588500 PROTEIN-RELATED 33 359 - -
Vium10970g00001 426 MobiDBLite consensus disorder prediction 1 33 - -
Vium10970g00001 426 MobiDBLite consensus disorder prediction 363 387 - -
Vium10970g00001 426 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 370 - -
Vium10970g00001 426 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Vium10970g00001 426 Pfam Protein kinase domain 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10970g00001 426 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Vium10970g00001 426 CDD STKc_IRAK 81 359 - -
Vium10970g00001 426 Gene3D Transferase(Phosphotransferase) domain 1 161 383 - -
Vium10970g00001 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vium10970g00001 426 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10970g00001 426 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10970g00001 Vium-Chr10970 8585 14600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10970g00001 1 356 Glycoside Hydrolase AT3G07070 43.011 1.94e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium10970g00001 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10970g00001 - - gmx:100784625 732.635