Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1096g00001 ATGATGGCCGACGATCCCATGCCCACGCGCTGGTCTTTCCAGGACTTCAAATTTTATTATGATGCTAAGTTTGGTAGGAAGAAGGCTGAGAAGAATGGCGAGACTGCTGATGAAGCGGTGGTAAGTAATGGAGGTTCATTGGGCATTGTGTCCAATGGCAATCCACATGCAAAAAAGGCATCGGAAATGGCTGTCTATGAGCAGTTTCGAACTGAGGGGCAGAACCAGATACACTCAAATGAATTTTCGCCGGTTAATATGGATGAAAGGCCGCATAAGTCTTTGCTTCCACCTTTTGAGTCTGCAGAAATGCGAACTTTAGCAGAGAGCCTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTATCGTGGGAAAGTATCAAGGGCTTAGAGAATGCCAAACGTTTGCTGAAAGAGGCTGTTGTGATGCCAATTAAGTATCCCAAGTACTTCACGGGTCTGTTATCACCATGGAAGGGCATCCTCCTCTTTGGACCACCAGGAACAGGAAAGACAATGCTTGCTAAGGCAGTTGCGACAGAGTGCAAGACTACCTTTTTTAATATTTCAGCATCATCTGTAGTTAGCAAATGGCGAGGTGATTCGGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGACGAAATTGATGCAATCATTAGTCAACGTGGGGAATCTCGTAGTGAACATGAAGCAAGTAGACGGTTGAAAACTGAGCTTCTTGTTCAGGTGATGCTTGTTTCTTACATTGAACATACTTTTTATAATCAAGTTAGTTAA 810 0.4333 MMADDPMPTRWSFQDFKFYYDAKFGRKKAEKNGETADEAVVSNGGSLGIVSNGNPHAKKASEMAVYEQFRTEGQNQIHSNEFSPVNMDERPHKSLLPPFESAEMRTLAESLSRDIIRGSPDVSWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGESRSEHEASRRLKTELLVQVMLVSYIEHTFYNQVS 269
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium1096g00001 269 Pfam ATPase family associated with various cellular activities (AAA) 161 254 IPR003959 GO:0005524|GO:0016887
Vium1096g00001 269 Gene3D - 120 255 IPR027417 -
Vium1096g00001 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 252 IPR027417 -
Vium1096g00001 269 PANTHER AAA DOMAIN-CONTAINING 60 254 - -
Vium1096g00001 269 FunFam Katanin p60 ATPase-containing subunit A-like 2 119 235 - -
Vium1096g00001 269 SMART AAA_5 157 256 IPR003593 GO:0016887
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium1096g00001 Vium-Chr1096 1753 24315 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1096g00001 99 254 Calmodulin-binding Proteins AT3G56690 42.038 1.21e-30 118