Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10968g00003 ATGGCTCTTTTCCGAAGGTTCTTTTACCGGAAACCACCCGATCACCTCCTCGAGATCTCCGACAGACTCTATGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGTTTATGTTGGGGGGGTCGTGGCTCAGCTACAGGATCACTATCCGGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGTCGAATTTCAGACATAATGTCTCAGTACGAGATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCCCTTTTGCCTCTGGAGATGATTCACCACTTCCTTCGGTCAAGTGAGAGCTGGTTGTCCTTGGAGAGCCAACAAAACGTGCTTTTAATGCACTGTGAAAGGGGTGGTTGGCCTGTACTTGCGTTTATGCTAGCTGGTCTTCTGTTGTACAGGAAACAGTACAACGGGGAACACAAAACTCTTGAAATGGTGTACAAGCAAGCACCCAAAGAACTTCTCCACCTTCTATCCCCTTTGAATCCACAACCTTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCTCGATGGCCTCCATCAGAAACACCCTTATATTTAGATTGCATTATTCTCAGGGTCCTTCCTCTGTTTGACAGAGGAAAAGGATGCAGACCGGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTTCCAACCGAAGTTCTAAGCTTCTTTCCTCCACTTCAATGGGCCAAAATCATGTTCGCCACTACTTGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCGTTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTCGTGAAGAGGTGATGTTCAGAGTCATGTTTCACACTGCGTTTGTACGGTCAAATATATTGACGCTGAGCCGCGATGAAATTGATATTCAGTGGGATGCAAAGGATCAGTTCCCCAAGGACTTCAAATTTGAGGTGCTTTTTTTGGACGCTGATGCTGTTATGCCTAATCTAAACACAGTCGATGCGAGTGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCTGAAGAGATCTTCAGCAGTGTAATTGATGTACTGGAAGGTAAGGGAGATTACGATTTTCCAATGGTTCATGACAGTGGAGTGGATGATGGAAGTCATAAAGAGATCTGGAAAGAGTATTCAGATCCTCATACTTTTCTGGATTCCGTGTTAGATGATGGGATTAACCAACAGGTTGATGATGGGAGGTACAAGCTTGACAAGGGGGTGGTTTTAGATACTCATGCTGTCAAAGATATTGGAGTGGATTATGGAGTAACTTTTATGACAATGGAAGTCACTCTGAATGCTCTTGATAAATTAGCAGTTAAGCAAAACAAATATGGCGAAGATAACAACAAAATGGAACAAGACTTAGAATCAGAACTAGGGCTGCAGGTGCTTGATATTTCCAGACCAAAATCTGATAAATTACTTATTTCTTCTGAAAAGAAACAACTTCCTTCAAACTCAAAGCCCATGCAAGAACCGCATGGTTTTCAGGCAAATTATGCAAAACCCAATGTAACAACTAGATCGGTTCCTTCTAGTAAGGGTTCTCTTCAAGATTCCATTAATTTCTCACATCCACCTTCAAGGAACAATAGTTCACCACTAACATTGTCATATGTTACCTCTGAAAACAAGGAAATCATTGATGCAAAAGGAAACTCTACTTCTAGTTCTCATGTCTCTGAAGTAATTGCTTTTATGGACACGATAAACGACCTGAAAAGCTGTGATGGTGATAACTCAATTTCTTCAGACGCTGTACCTGAAATAGGCTCAAACTGTCCAGTCAAAGAGACATCTCTTCAGTTAGCTAATCAAGCACCACAACAGAGCTATGATCAAATGTTACAACTTCATCCACCTCCACCTCCTCCTCCACCTCCAATTTTTGGACAAAATACCCATTGGAAATCTGTTGGACCTCCTTCTCCTCCCATTGCAAATGGTGTAATTCCATCAAAAGTTTCACTAGCACCACCACCACCACCTCCTCCTCCCCCTCCTTTGCAGTCTACAAATGAACCTTCGCTTCCTTCTACCTCAATCTCTCCAACAACGTTTAAAGCTCCACCTCCTGCA 2169 0.4302 MALFRRFFYRKPPDHLLEISDRLYVFDCCFSKNVLEEEEYKVYVGGVVAQLQDHYPDASFMVFNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLESQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPKELLHLLSPLNPQPSHLRYLQYISRRHLGSRWPPSETPLYLDCIILRVLPLFDRGKGCRPVVRVYGPDPSKPSNRSSKLLSSTSMGQNHVRHYLQAECMLVKIDIRCHVQGDVVLECIHLSDDFVREEVMFRVMFHTAFVRSNILTLSRDEIDIQWDAKDQFPKDFKFEVLFLDADAVMPNLNTVDASDTECASPEAEEFYEAEEIFSSVIDVLEGKGDYDFPMVHDSGVDDGSHKEIWKEYSDPHTFLDSVLDDGINQQVDDGRYKLDKGVVLDTHAVKDIGVDYGVTFMTMEVTLNALDKLAVKQNKYGEDNNKMEQDLESELGLQVLDISRPKSDKLLISSEKKQLPSNSKPMQEPHGFQANYAKPNVTTRSVPSSKGSLQDSINFSHPPSRNNSSPLTLSYVTSENKEIIDAKGNSTSSSHVSEVIAFMDTINDLKSCDGDNSISSDAVPEIGSNCPVKETSLQLANQAPQQSYDQMLQLHPPPPPPPPPIFGQNTHWKSVGPPSPPIANGVIPSKVSLAPPPPPPPPPPLQSTNEPSLPSTSISPTTFKAPPPA 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10968g00003 723 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Vium10968g00003 723 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Vium10968g00003 723 Gene3D - 207 336 - -
Vium10968g00003 723 MobiDBLite consensus disorder prediction 637 723 - -
Vium10968g00003 723 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vium10968g00003 723 MobiDBLite consensus disorder prediction 685 703 - -
Vium10968g00003 723 MobiDBLite consensus disorder prediction 647 661 - -
Vium10968g00003 723 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Vium10968g00003 723 Gene3D Protein tyrosine phosphatase superfamily 13 206 IPR029021 -
Vium10968g00003 723 MobiDBLite consensus disorder prediction 508 523 - -
Vium10968g00003 723 PANTHER FORMIN-J 1 720 - -
Vium10968g00003 723 MobiDBLite consensus disorder prediction 507 564 - -
Vium10968g00003 723 SMART PTEN_C2_2 198 338 IPR014020 -
Vium10968g00003 723 MobiDBLite consensus disorder prediction 530 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10968g00003 Vium-Chr10968 37655 41026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10968g00003 1 582 FH2 protein (formin) Gene Family AT5G07740 57.212 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10968g00003 - - vum:124820270 1348.95