Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10968g00002 ATGCCTGGAGGCACAGCTCCTCCACCACCTTTAGGTGGTCGAGGCCAACCTCCTACTGGAACGCGAGCTACTCTTGCTCATTCTCCCCATGTACCTCTTGGTGGTGCTCCTTTTCCTTCACCAATTGGAACTGATACAAGAGGGAAAGGTCGGGGACTTGGACGTCCTACTGGGGCTGGTGCCATGGGAACTCGGAAATCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGATGAACTACAAAGACGTGGAGAGCTTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTCAGATGGTAAACCTGGCGGGCGGCGCAAATCTGTTGGATCTAAAGCTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCTCTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGTACTTGACTGTTTATGCAGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGTTTATGTTGGGGGGGTCGTGGCTCAGCTACAGGATCACTATCCGGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGTCGAATTTCAGACATAATGTCTCAGTACGAGATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCCCTTTTGCCTCTGGAGATGATTCACCACTTCCTTCGGTCAAGTGAGAGCTGGTTGTCCTTGGAGAGCCAACAAAACGTGCTTTTAATGCACTGTGAAAGGGGTGGTTGGCCTGTACTTGCGTTTATGCTAGCTGGTCTTCTGTTGTACAGGAAACAGTACAACGGGGAACACAAAACTCTTGAAATGGTGTACAAGCAAGCACCCAAAGAACTTCTCCACCTTCTATCCCCTTTGAATCCACAACCTTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCTCGATGGCCTCCATCAGAAACACCCTTATATTTAGATTGCATTATTCTCAGGGTCCTTCCTCTGTTTGACAGAGGAAAAGGATGCAGACCGGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTTCCAACCGAAGTTCTAAGCTTCTTTCCTCCACTTCAATGGGCCAAAATCATGTTCGCCACTACTTGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCGTTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTCGTGAAGAGGTGATGTTCAGAGTCATGTTTCACACTGCGTTTGTACGGTCAAATATATTGACGCTGAGCCGCGATGAAATTGATATTCAGTGGGATGCAAAGGATCAGTTCCCCAAGGACTTCAAATTTGAGGTGCTTTTTTTGGACGCTGATGCTGTTATGCCTAATCTAAACACAGTCGATGCGAGTGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCTGAAGAGATCTTCAGCAGTGTAATTGATGTACTGGAAGGTAAGGGAGATTACGATTTTCCAATGGTTCATGACAGTGGAGTGGATGATGGAAGTCATAAAGAGATCTGGAAAGAGTATTCAGATCCTCATACTTTTCTGGATTCCGTGTTAGATGATGGGATTAACCAACAGGTTGATGATGGGAGGTACAAGCTTGACAAGGGGGTGGTTTTAGATACTCATGCTGTCAAAGATATTGGAGTGGATTATGGAGTAACTTTTATGACAAAGGAAGTCACTCTGAATGCTCTTGATAAATTAGCAGTTAAGCAAAACAAATATGGCGAAGATAACAACAAAACGGAACAAGACTTAGAATCAGAACTAGGGCTGCAGGTGCTTGATATTTCCAGACCAAAATCTGATAAATTACTTATTTCTTCTGAAAAGAAACAACTTCCTTCAAACTCAAAGCCCATGCAAGAACCGCATGGTTTTCAGGCAAATTATGCAAAACCCAATGTAACAACTAGATCGGTTCCTTCTAGTAAGGGTTCTCTTCAAGATTCCATTAATTTCTCACATCCACCATCAAGGAACAATAGTTCACCACTAACATTGTCATATGTTACCTCTGAAAACAAGGAAATCATTGATGCAAAAGGAAACTCTACTTCTAGTTCTCATGTCTCTGAAGTAATTGCTTTTATGGACACGATAAACGACCTGAAAAGCTGTGATGGTGATAACTCAATTTCTTCAGACGCTGTACCTGAAATAGGCTCAAACTGTCCAGTCAAAGAGACATCTCTTCAGTTAGCTAATCAAGCACCACAACAGAGCTATGATCAAATGTTACAACTTCATCCACCTCCACCTCCTCCTCCACCTCCAATTTTTGGACAAAATACCCATTGGAAATCTGTTGGACCTCCTTCTCCTCCCATTGCAAATGGTGTAATTCCATCAAAAGTTTCACTAGCACCACCACCACCACCTCCTCCTCCCCCTCCTTTGCAGTCTACAAATGAACCTTCGCTTCCTTCTACCTCAATCTCTCCAACAACGTTTAAAGCTCCACCTCCTGCACCCCGACCACCACATTATCCTTCACCTCCTTTAAGTAAATCTACACCACTTCCTCCGCCTCCTTTAGGTACTGCTCCACCAGCACCACCACCTCCTCCTCCTTTAAGTGCTGCTCCACCACCGCCACCTCCTCCTCCTTCTTTATCCAGAGGTTCACCTCCTCCACCACCGCTCCCTCCATCCAGTAGAGCACCACCTCCACCGTCATCTTCTTCACTGTCCAGAGCTCCACCTCCTCCACCTCCACCAAATCGTGGACCACCACCAACAACAATGCCTGGAGGCACAGCTCCTCCACCACCTTTAGGTGGTCGAGGCCAACCTCCTACTGGAACGCGAGCTACTCTTGCTCATTCTCCCCATGTACCTCTTGGTGGTGCTCCTTTTCCTTCACCAATTGGAACTGATACAAGAGGGAAAGGTCGGGGACTTGGACGTCCTACTGGGGCTGGTGCCATGGGAACTCGGAAATCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGATGAACTACAAAGACGTGGAGAGCTTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTCAGATGGTAAACCTGGCGGGCGGCGCAAATCTGTTGGATCTAAAGCTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCTCTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGTATTTTTTAGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAACTTAGAGTATTCTCTTTCAAAATTCAGTTTGGGACTCAGATTACAGAATTTAAGAAGAGTTTACACACAGTCAACTCTGCTTGTGAAGAGGTCCGAAACTCATTCAAACTAAAGGAGATCATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTAGACAGTCTCTTAAAACTAACTGACACTCGTGCTTCAAATAGTAAAATGACACTCATGCATTTTCTTTGCAAGGTCCTAGCTGAAAGGTTTCCTGGACTCCTTGATTTTCACCTTGACCTTATTAGCTTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAAGCAATCATCAGGGGATTAGAAAAGGTCAAACAGGAGCTGGCTGCATCTGAAAACGATGGCCCAGTGACTGAAGTTTTTCGTAAGACATCGAAGGAATTCATTGCTGTTGCAGGGTCAGAGGTGGCATCTGTAACAAACCTATATTCTGTGGTGGGAAGAAATGCAGATGTACTTGCCCTATATTTTGGTGAGGACCCTGCCCGCTGTCCTTTCGAGCAAGTTACTGCAACTCTCTTGAATTTCACAAGGTTGTTTCTGAAGGCACATGAAGAGAATTACAAACAAACAGTGTTAGAGAAAAAGAAAGCTGATAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTCATAAGGAAGAGTGGAAAAGATGAAGAAGAAAGTTGA 4596 0.4382 MPGGTAPPPPLGGRGQPPTGTRATLAHSPHVPLGGAPFPSPIGTDTRGKGRGLGRPTGAGAMGTRKSSLKPLHWSKVTRALQGSLWDELQRRGELQITQEFDVSEIEKLFSANVPKPADSDGKPGGRRKSVGSKADKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKYLTVYAVFDCCFSKNVLEEEEYKVYVGGVVAQLQDHYPDASFMVFNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLESQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPKELLHLLSPLNPQPSHLRYLQYISRRHLGSRWPPSETPLYLDCIILRVLPLFDRGKGCRPVVRVYGPDPSKPSNRSSKLLSSTSMGQNHVRHYLQAECMLVKIDIRCHVQGDVVLECIHLSDDFVREEVMFRVMFHTAFVRSNILTLSRDEIDIQWDAKDQFPKDFKFEVLFLDADAVMPNLNTVDASDTECASPEAEEFYEAEEIFSSVIDVLEGKGDYDFPMVHDSGVDDGSHKEIWKEYSDPHTFLDSVLDDGINQQVDDGRYKLDKGVVLDTHAVKDIGVDYGVTFMTKEVTLNALDKLAVKQNKYGEDNNKTEQDLESELGLQVLDISRPKSDKLLISSEKKQLPSNSKPMQEPHGFQANYAKPNVTTRSVPSSKGSLQDSINFSHPPSRNNSSPLTLSYVTSENKEIIDAKGNSTSSSHVSEVIAFMDTINDLKSCDGDNSISSDAVPEIGSNCPVKETSLQLANQAPQQSYDQMLQLHPPPPPPPPPIFGQNTHWKSVGPPSPPIANGVIPSKVSLAPPPPPPPPPPLQSTNEPSLPSTSISPTTFKAPPPAPRPPHYPSPPLSKSTPLPPPPLGTAPPAPPPPPPLSAAPPPPPPPPSLSRGSPPPPPLPPSSRAPPPPSSSSLSRAPPPPPPPNRGPPPTTMPGGTAPPPPLGGRGQPPTGTRATLAHSPHVPLGGAPFPSPIGTDTRGKGRGLGRPTGAGAMGTRKSSLKPLHWSKVTRALQGSLWDELQRRGELQITQEFDVSEIEKLFSANVPKPADSDGKPGGRRKSVGSKADKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKYFLELMKVPRVESKLRVFSFKIQFGTQITEFKKSLHTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPGLLDFHLDLISLEAATKIQLKSLAEEMQAIIRGLEKVKQELAASENDGPVTEVFRKTSKEFIAVAGSEVASVTNLYSVVGRNADVLALYFGEDPARCPFEQVTATLLNFTRLFLKAHEENYKQTVLEKKKADKEAEMEKAKGINFIRKSGKDEEES 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 1 15 - -
Vium10968g00002 1531 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 240 381 IPR029021 -
Vium10968g00002 1531 SMART it6_source 842 1531 IPR015425 -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 112 132 - -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 908 1022 - -
Vium10968g00002 1531 ProSiteProfiles C2 tensin-type domain profile. 393 532 IPR014020 -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 1119 1139 - -
Vium10968g00002 1531 SUPERFAMILY Formin homology 2 domain (FH2 domain) 72 217 - -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 830 1077 - -
Vium10968g00002 1531 PANTHER FORMIN-J 215 920 - -
Vium10968g00002 1531 Gene3D Formin, FH2 domain 1220 1519 IPR042201 -
Vium10968g00002 1531 PRINTS Proline rich extensin signature 922 939 - -
Vium10968g00002 1531 PRINTS Proline rich extensin signature 941 966 - -
Vium10968g00002 1531 PRINTS Proline rich extensin signature 843 859 - -
Vium10968g00002 1531 PRINTS Proline rich extensin signature 901 917 - -
Vium10968g00002 1531 PRINTS Proline rich extensin signature 880 901 - -
Vium10968g00002 1531 Gene3D Protein tyrosine phosphatase superfamily 221 399 IPR029021 -
Vium10968g00002 1531 Pfam Formin Homology 2 Domain 1071 1218 IPR015425 -
Vium10968g00002 1531 Pfam Formin Homology 2 Domain 64 215 IPR015425 -
Vium10968g00002 1531 Pfam Formin Homology 2 Domain 1219 1488 IPR015425 -
Vium10968g00002 1531 Coils Coil 1395 1422 - -
Vium10968g00002 1531 Coils Coil 1489 1509 - -
Vium10968g00002 1531 SMART PTEN_C2_2 391 531 IPR014020 -
Vium10968g00002 1531 Gene3D Formin, FH2 domain 1068 1219 IPR042201 -
Vium10968g00002 1531 Gene3D Formin, FH2 domain 61 220 IPR042201 -
Vium10968g00002 1531 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1066 1514 IPR015425 -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 700 757 - -
Vium10968g00002 1531 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1219 1516 - -
Vium10968g00002 1531 Pfam C2 domain of PTEN tumour-suppressor protein 392 529 IPR014020 -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 723 757 - -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 1 70 - -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 701 716 - -
Vium10968g00002 1531 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1143 1218 - -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 878 896 - -
Vium10968g00002 1531 MobiDBLite consensus disorder prediction 840 854 - -
Vium10968g00002 1531 Gene3D - 400 529 - -
Vium10968g00002 1531 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 393 529 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10968g00002 Vium-Chr10968 20904 37505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10968g00002 215 761 FH2 protein (formin) Gene Family AT5G07740 57.831 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10968g00002 - - vum:124820270 1767.28